Search Results for "read"
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Showing 70 open source projects for "read"
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Selenium-python Helium
Selenium-python but lighter: Helium is the best Python library
...Helium on the other hand lets you refer to elements by user-visible labels. As a result, Helium scripts are typically 30-50% shorter than similar Selenium scripts. What's more, they are easier to read and more stable with respect to changes in the underlying web page. Selenium-python is great for web automation. Helium makes it easier to use. Helium ships with its own copies of ChromeDriver and geckodriver so you don't need to download and put them on your PATH. Unlike Selenium, Helium lets you interact with elements inside nested iFrames, without having to first "switch to" the iFrame. ... -
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Astropy
Repository for the Astropy core package
The Astropy Project is a community effort to develop a common core package for Astronomy in Python and foster an ecosystem of interoperable astronomy packages. Astropy is a Python library for use in astronomy. Learn Astropy provides a portal to all of the Astropy educational material through a single dynamically searchable web page. It allows you to filter tutorials by keywords, search for filters, and make search queries in tutorials and documentation simultaneously. The Anaconda Python... -
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
...Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https://sourceforge.net/p/healpix/wiki/Exchanging%20Data%20with%20HEALPix/ GDL and FL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/ -
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MOSSCO
Modular System for Shelves and Coasts
...Quick Start: git clone git://git.code.sf.net/p/mossco/setups mossco-setups git clone git://git.code.sf.net/p/mossco/code mossco-code cd mossco-code cat QuickStart.md or read online https://sf.net/p/mossco/code/ci/master/tree/QuickStart.md Beware: this is alpha software, expect trouble! ------------------------- Better, read the full documentation online http://www.mossco.de/doc or make it yourself make doc acroread doc/mossco_documentation.pdf ---------------------- Why MOSSCO? MOSSCO, the "Modular System for Shelves and Coasts" is a framework for coupling processes or domains that are originally developed in standalone numerical models. ... -
6
BioXTAS RAW
Processing and analysis of Small Angle X-ray Scattering (SAXS) data.
BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis... -
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WordCount
Count frequency of single, 2-word and 3-word clusters in a text
The program can read a text file and count the occurrences of single words and clusters of 2 and 3 words. The resulting list will be sorted in descending order (highest frequency on top). -
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PythonCAD
CAD Application entire developed in Python
PythonCAD is a CAD package written, surprisingly enough, in Python using the PySide6 interface and python3. The PythonCAD project aims to produce a scriptable, open-source, easy to use CAD package (Cross Platforms) -
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xrayutilities
a package with useful scripts for X-ray diffraction physicists
xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). More detailed description as well as documentation can be found at webpage http://xrayutilities.sourceforge.io/. ... -
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CiteFlow
Desktop research workspace for PDFs, notes, citations, bibliographies.
CiteFlow is a focused desktop research workspace for students, researchers, and academic writers who want to manage PDFs, notes, citations, and bibliographies in one place. Create project-based workspaces for essays, articles, reports, literature reviews, and long-form research. Import PDFs, read them inside the app, search within documents, compare files side by side, highlight key passages, and add page-based notes. CiteFlow can assist with DOI metadata detection, keeps citation history linked to copied text, and generates citations and bibliographies in APA 7 and MLA 9. OCR support helps make scanned PDFs searchable, while project-wide search helps you find matching text across PDFs, highlights, and notes. ... -
11
Gem Measure
Live gemstone symmetry & distortion measurement
...Works with USB microscopes, webcams, or any image file. How to Use Open an image (F) or connect a camera (C). Adjust the polygon by dragging its vertices to match the gem outline. Read deviation percentages, symmetry score, and edge lengths directly on screen. Calibrate (K) by clicking two points and entering their real distance (e.g., 5 mm) to switch to metric units. Add rulers (M) to measure arbitrary lengths, dividing them into any number of equal parts. Save results (S) or export a text report (E). -
12
DBRplot
Plots reflectivity response of Distributed Braggs Reflector mirrors
A free windows software for designing and modelling of dielectric anti-reflection coating and Fabry-Perot cavity effects based on Distributed Braggs Reflector (DBR) mirrors. Read 'readme.txt' file before you use this application. Also, have a look at the "Fabry-Perot cavity" diagram to get a feel of the structure of your cavity. The code is written based on the Transfer Matrix Method for TE incidence. Clever insertion of the input parameters in the GUI will let you simulate the reflectivity response of many physical systems on a substrate such as various DBR mirror cavities and DBR mirrors. ... -
13
CodonU
A python project for analysis of codon usage for gene or genome analys
With CodonU, you can now easily read, manipulate, and analyze various file formats used in this kind of analysis, and generate high-quality graphics suitable for publishing. This open-source project incorporates various statistical measures necessary for codon usage analysis, including codon adaptation index, codon bias index, Gravy score, and correspondence analysis for both nucleotide and protein sequences. -
14
osm4scala
Reading OpenStreetMap Pbf files.
Scala and polyglot Spark library (Scala, PySpark, SparkSQL, ... ) focused on reading OpenStreetMap Pbf files. -
15
MiModD
Mutation Identification in Model Organism Genomes using Desktop PCs
MiModD is a software package for genomic variant identification from next-generation sequencing (NGS) data with optimized usage of system resources and a user-friendly interface. For most model organism genomes it lets the user carry out a complete analysis from unaligned genomic NGS read data to an annotated list of variants on a regular Desktop PC within a few hours. Its user-interface is beginner-friendly and designed to encourage geneticists to analyze NGS data themselves without the help of a trained bioinformatician. -
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OpenNum
OpenNum lets you distribute solvers with a nice graphical interface
...More specifically, OpenNum lets you · to collect a hierarchical dataset, · to call any executable file and · to visualize scalar and vector fields, plot graphs or show simple plain text files. It also has other useful utilities specifically designed for numerical simulation packages: · it allows managing a centralized materials dataset; · it can read several finite element mesh formats and several field formats. -
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Brewery HMI
Web app for all-grain brewers. Automate your electric brewery.
...By default, this app relies on user inputs and feedback from the real-world. There are easy hooks to a link up a real system, so that if you wanted to automate some of the input and feedback it could be possible (ex. read temperature from sensor. Turn heat source on/off). This project uses the free Maker Edition of the Ignition platform. https://inductiveautomation.com/ignition/maker-edition Sierra Nevada and Stone Brewery use the (paid) Ignition platform. https://inductiveautomation.com/resources/casestudy/ignition-system-meets-all-user-requests https://inductiveautomation.com/resources/casestudy/brewery-improves-efficiency-in-multiple-areas-with-ignition -
18
PiTherm
A CPU Temperature display for Raspberry Pi
Read the temperature, display it on this neat little 10-LED muticolor array. The array has, in order, BGGGGYYYRR LEDs. This first version is a trivial program that scans the CPU temp and uses 10 GPIO pins, one for each LED. -
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Pydicom by examples
Basic and intermediate examples of DICOM library with Jupyter
Basic and intermediate examples to read, modify and write DICOM files with Python code using Jupyter - To install Jupyter - https://jupyter.org/install ====== All examples are based on Pydicom. An open source library - https://pydicom.github.io/ -
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plot.py
direct data plotting and evaluation
The Plot.py project tries to supply a measurement data visualization and treatment framework being easy to use while keeping the freedom for advanced users to execute additional data treatment algorithms. Plotting is done via gnuplot and the script used to produce the graphs can be exported for later use/changes. Many raw experimental data types (mostly of x-ray and neutron scattering experiments) are supported with more to be added on user request. The data treatment includes... -
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CHLone
CGNS/HDF5 compliant library
CHLone is a CGNS/SIDS compliant mapping on HDF5. You can read/write CGNS/HDF5 files and access to node through a C API interface or using a Python module. -
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owfs and owhttpd
Project moved to https://github.com/owfs/owfs/
...Basically you can use these inexpensive little sensors and other chips with very simple wiring to sense and control the physical environment. The interface is very flexible -- everything from a web browser, to read and writing directly to the chip's "file" to integrating with your programs -- even over the internet. There is a growing number of 1-wire sensors: temperature, voltage, humidity, light, ultraviolet, pressure, thermisters, thermocouples, programmable microcontrollers, relays, lights, LCD panels, etc -
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PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results -
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lr2rmats
Long read to rMATS
lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/ -
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Antenna, a free and open-source dvb-t (terrestrial digital tv) tuner for linux desktops. Antenna is a full featured tool to see what's going on in the sky. It enables you to scan, watch and record television, radio and services broadcasted on air.