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Showing 471 open source projects for "read"
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ScholArxiv
ScholArxiv is an open-source aesthetic and minimal app
ScholArxiv is an open-source, aesthetic and minimal app that allows users to search, read, bookmark, share, download, and view summaries of academic papers from the arXiv repository. Now you can configure your Gemini API key and converse with AI to expand and dive deeper into the papers you're exploring. -
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Bowtie 2
A fast and sensitive gapped read aligner
Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. -
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Baritone
Google maps for block game
...Baritone is the pathfinding system used in Impact since 4.4. How to immediately get started: Type #goto 1000 500 in chat to go to x=1000 z=500. Type #mine diamond_ore to mine diamond ore. Type #stop to stop. For more, read the usage page and/or watch this tutorial playlist. For other versions of Minecraft or more complicated situations or for development, see Installation & setup. Also consider just installing Impact, which comes with Baritone and is easier to install than wrangling with version JSONs and zips. For 1.16.5, click here and see description. ... -
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arduino-cli
Arduino command line tool
Arduino CLI is an all-in-one solution that provides Boards/Library Managers, sketch builders, board detection, uploader, and many other tools needed to use any Arduino compatible board and platform from the command line or machine interfaces. In addition to being a standalone tool, Arduino CLI is the heart of all official Arduino development software (Arduino IDE, Arduino Web Editor). The script requires sh, which is always available on Linux and macOS. sh is not available by default on... -
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Astropy
Repository for the Astropy core package
The Astropy Project is a community effort to develop a common core package for Astronomy in Python and foster an ecosystem of interoperable astronomy packages. Astropy is a Python library for use in astronomy. Learn Astropy provides a portal to all of the Astropy educational material through a single dynamically searchable web page. It allows you to filter tutorials by keywords, search for filters, and make search queries in tutorials and documentation simultaneously. The Anaconda Python... -
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GeoServer
GeoServer repository
GeoServer is an open-source software server written in Java that allows users to share and edit geospatial data. Designed for interoperability, it publishes data from any major spatial data source using open standards. Being a community-driven project, GeoServer is developed, tested, and supported by a diverse group of individuals and organizations from around the world. GeoServer is the reference implementation of the Open Geospatial Consortium (OGC) Web Feature Service (WFS) and Web... -
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kallisto
Near-optimal RNA-Seq quantification
...It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. And since it uses pseudoalignment, it is robust to errors in the reads and preserves the key information needed for quantification. This makes kallisto not only fast but highly accurate as well. In many benchmarks, it even greatly outperforms existing tools. -
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Leiningen
Automate Clojure projects easily
...With a focus on project automation and declarative configuration, it gets out of your way and lets you focus on your code. Leiningen and Clojure require Java. OpenJDK version 8 is recommended at this time. If you have Leiningen installed, you can read the tutorial by running lein help tutorial. It does not cover learning the language itself; good Clojure documentation can be found elsewhere. If your preferred package manager offers a recent version of Leiningen, try that first as long as it has version 2.x. Windows users can use the above script in the Linux subsystem or try the batch file or Powershell version instead. ... -
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MyBatis Mapper4
Mybatis common mapper, easy to use
This book starts with a simple MyBatis query to build a basic development environment for learning MyBatis. Through a comprehensive sample code and test, the basic usage of adding, deleting, modifying, and checking operations in the MyBatis XML mode and annotation mode is explained, and the application of dynamic SQL in different aspects and the best practice program in the use process are introduced. Provides a wealth of examples for MyBatis advanced mapping, stored procedures, and type... -
Build Securely on Azure with Proven FrameworksMoving to the cloud brings new challenges. How can you manage a larger attack surface while ensuring great network performance? Turn to Fortinet’s Tested Reference Architectures, blueprints for designing and securing cloud environments built by cybersecurity experts. Learn more and explore use cases in this white paper.
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ThingPulse ESP8266 Weather Station
ESP8266 Weather Station library supporting OpenWeatherMap
...NTP-based time class written by Fabrice Weinberg. We fixed many bugs and improved performance and changed the API a little bit. Either compare your code to the updated WeatherStationDemo or read through the upgrade guide. -
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Papers We Love
Papers from the computer science community to read and discuss
Papers We Love (PWL) is a global open source community dedicated to reading, discussing, and sharing influential computer science research papers. The repository serves as a curated directory of academic papers that have shaped the field of computing, providing a centralized location for documents that were previously scattered across various online sources. While licensing restrictions prevent hosting all papers directly, PWL offers links to their original sources and clearly marks hosted... -
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Gonum
Set of numeric libraries for the Go programming language
...We encourage you to get started with Go and Gonum if you are tired of sluggish performance, and fighting C and vectorization, and also if you are struggling with managing programs as they grow larger. Get Gonum if you want code to be fully transparent, and want the ability to read the source code you use. It is useful if you’d like a compiler to catch mistakes early, but hate fighting linker and unintelligible compile errors. -
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Selenium-python Helium
Selenium-python but lighter: Helium is the best Python library
...Helium on the other hand lets you refer to elements by user-visible labels. As a result, Helium scripts are typically 30-50% shorter than similar Selenium scripts. What's more, they are easier to read and more stable with respect to changes in the underlying web page. Selenium-python is great for web automation. Helium makes it easier to use. Helium ships with its own copies of ChromeDriver and geckodriver so you don't need to download and put them on your PATH. Unlike Selenium, Helium lets you interact with elements inside nested iFrames, without having to first "switch to" the iFrame. ... -
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Subread
High-performance read alignment, quantification and mutation discovery
..."The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote", Nucleic Acids Research, 2013, 41(10):e108 -
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Yet Another BACnet Explorer
Graphical explorer for BACnet and Free BACnet library in C#
Graphical explorer program written in C#, for browsing BACnet devices (run on Windows & Linux). Supports BACnet MS/TP, Ethernet, IPv4, IPv6, SecureConnect Basic functions for read, write, read multiple, write multiple, iam, whois, subscribeCOV, notify, WriteFile, ReadFile etc. Includes three demo server applications : a generic server, a wall mounted room controller simulator, a weather server (gets data from an Internet webservice). Includes a lot of samples C# source code. Raspberry Pi server sample code, also tested on Beaglebone & Intel Edison. ... -
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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BBMap
BBMap short read aligner, and other bioinformatic tools.
This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. -
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Modbus Tool
Modbus master tool to debug communication
Modbus TCP and Modbus RTU client application MODBUS FUNCTIONS -Read coils (01) -Read discrete inputs (02) -Read holding registers (03) -Read input registers (04) -Write single coils (05) -Write single registers (06) -Write multiple coils (15) -Write multiple holding registers (16) -Diagnostics (08) DATA TYPES -Short -Integer -Float -Double -
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IEDExplorer
IEC61850 IED Explorer in .net
IEDExplorer is an IEC 61850 client tool written for testing and educational purposes. IEDExplorer can connect to an IEC61850 device (also called an IED) over MMS (ISO/IEC9506-1 and ISO/IEC 9506-2) communication protocol. The tool is written in pure C# including the MMS ASN.1 parser (based on BinaryNotes ASN.1 tool) and runs in .net environment, on Windows. Linux/Mono support has been lost on the way (volunteers welcome). See Features for what the tool can do for you. I will appreciate... -
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OpenJUMP is a community driven fork of JUMP the "Java Unified Mapping Platform" GIS software. The original JUMP was developed by Vivid Solutions, released under GPL2 in 2003 and discontinued in 2006. During 2004 already some enthusiastic developers joined together to enhance further the features of JUMP. They launched an independent development branch called OpenJUMP. The name gives credit to the original JUMP development, and at the same time describes the objectives of this project to...
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Skim
A PDF Reader and Note-taker for OS X
Skim is a PDF reader and note-taker for OS X. It is designed to help you read and annotate scientific papers in PDF, but is also great for viewing any PDF file. Skim requires OS X 10.10 or higher. -
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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ModbusBB
Professional Modbus master/client for Windows. TCP & RTU, FC01–FC16
...Supports both Modbus TCP/IP and Modbus RTU serial protocols with full configuration options for any industrial device. All standard function codes FC01 through FC16 are supported including Read Coils, Read Discrete Inputs, Read Holding Registers, Read Input Registers, Write Single Coil, Write Single Register, and Write Multiple Registers. Key features: - Auto-polling with configurable intervals from 100ms to 10 seconds - Complete communication log with request/response details and CSV export - Device scanner to discover slave IDs and valid register ranges - Watchdog alerts when values change or exceed thresholds - Connection profiles to save and switch between device configurations - Data logging to CSV with timestamps for trend analysis in Excel - Modern GUI and command-line (CLI) interface for auto -
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
...Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https://sourceforge.net/p/healpix/wiki/Exchanging%20Data%20with%20HEALPix/ GDL and FL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/ -
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.
