Open Source Java Scientific/Engineering Software - Page 6

CPSeis is the open-source version of ConocoPhillips' former seismic processing system. Uses Fortran 90 and C/C++ layers for I/O. The new system was designed using an MPI-parallel model and works well on Linux clusters or on individual workstations.

SARGE - Search And Rescue Game Environment is a multi-player training game for robot operators which also supports agent based robot control for simulation work via TCP.

niftilib is a collection of i/o routines for the nifti1 neuroimage data format. C (nifticlib), Java (niftijlib), Matlab (niftimatlib), and Python (pynifti) code is available. For nifti format info see: http://nifti.nimh.nih.gov/

SVEditor is an Eclipse-based IDE (Integrated Development Environment) for SystemVerilog and Verilog files. It features syntax coloring, content assist, source indent and auto-indent, and structure display.

Community Z Tools Project (CZT): Tools for editing, typechecking and animating Z specifications and related notations. Includes a Java framework for building formal methods tools. NOTE: development of CZT has now moved to GitHub: https://github.com/community-z-users/czt

Wordcorr automates the tedious and risky process of tabulating and managing the sound correspondences used in working out the historical development of natural languages. Initial support was from NSF.

DLD V 2.0 Released Digital Logic Design is a Software tool for designing and simulating digital circuits. It provides digital parts ranging from simple gates to Arithmetic Logic Unit. You may start your circuit from simple gates and flipflops and keep on converting them into ICs. These ICs, later on, may be incorporated into other circuits to built more complex circuits like CPU. You may even use SOP expressions to generate digital circuits in IC form. You can use this software to design Combinational, Synchronous and Asynchronous Sequential Circuits. The circuit working can be analyzed by using output parts like LEDs, Seven Segment Display as well as CRT and digital Oscilloscope all provided in the software. This Software may be used by professionals, hobbyists and students alike. The teachers may incorporate this software in their courses like Digital Logic and Computer Design, Computer Architecture, Computer Organization and Embedded Systems.

PeerSim is a simulation environment for P2P protocols in java. Its features include easy configuration, extendability and high performance.

This project\'s goal is to replace and extend Excel spreadsheets used in creating remote control upgrades for UEI remotes with a Java equivelent. More information on the UEI remote upgrade interface can be found at http://www.hifi-remote.com/jp1

TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en. Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM.

The Chemistry Development Kit (CDK) is a scientific, LGPL-ed library for bio- and cheminformatics and computational chemistry written in Java. The main home page of the CDK is now at: http://cdk.github.io

A java library for geometry applications. Provides a general framework for manipulating and creating geometric primitives, computing intersection points between shapes, composing them to create new shapes, and performing some measurements. Important note: the repository has now moved to GitHub: https://github.com/dlegland/javaGeom Please update bookmarks!

Converts Google Earth KML file to a CSV file, and vice versa. This enables you to plot all custom POIs with Google Earth first before transferring them into your Garmin GPS using the POI Loader.

GeoWebCache is a WMS tile cache that lets you serve cached map data to WMS clients, Goole Earth, Google Maps and MS Virtual Earth. The system is pluggable on both ends and does automatic matching to the best available tile. It is very fast and scalable.

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

The Mars Simulation Project is an open source Java project to create a simulation of future human settlement on the planet Mars. See https://github.com/mars-sim/mars-sim for the LATEST issues/wiki/code change

GeomSS is a geometry modeling and scripting system in Java. Write scripts that create and analyze complex geometry including NURBS curves and surfaces. This is especially useful for tasks that must be repeated with small or parametric variations.

An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.

Distributed Generic Information Retrieval (DiGIR) - developing and testing a protocol for single point access to distributed data sources. Based on HTTP, XML, and UDDI.

TASSEL is a bioinformatics software package that can analyze diversity for sequences, SNPs, or SSRs. Genotype/phenotype associations can be carried out by GLM or a mixed model. Estimates distance and linkage disequilibrium statistics.

BenchLab is a Web Application benchmarking framework using real web browsers.

JMCAD is an program for the modeling and simulation of complex dynamic systems. This includes the ability to construct and simulate block diagrams. The visual block diagram interface offers a simple method for constructing, modifying and maintaining complex system models. The simulation engine provides fast and accurate solutions for linear, nonlinear, continuous time, discrete time, time varying and hybrid system designs. With JMCAD, users can quickly develop software or "virtual" prototypes of systems or processes to demonstrate their behavior prior to building physical prototypes. The user builds his system model by selecting predefined blocks from a block library and simply wiring the blocks together. Each block of the diagram performs a function. Users can also create custom blocks in Java and add them to the JMCAD block library. JMCAD is a block diagram language for creating complex nonlinear dynamic systems.

Ghawwas (previously known as Khawas) is an open source system for Arabic corpora processing. Ghawwas V4.0 provides the following main functions: a. Frequency list for single word and N-Grams b. Concordance c. Collocation (MI, CHI Squared, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient) d. Lexical patterns search e. Two corpora frequency profile comparison based on MI, CHI, LL, T-Score, Z Score, Dice, Log Dice, Weirdness Coefficient f. Accept Windows and UTF-8 character encoding g. Accept TXT, DOC, DOCX, RTF and HTML formats h. Export the processing results in CSV file format

The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.