Open Source Java Scientific/Engineering Software - Page 9

The purpose of GeoRaptor project is to extend Oracle SQL Developer with additional functionality for database administrators or developers working with Oracle Spatial data. Dear Users, A port to version 4.x of SQL Developer is being attempted. It is not simple due to the lack of development resources. Please keep using GeoRaptor with SQL Developer 3.x until the new version is available. Thanks. Simon Greener

Geomajas is a web mapping GIS software with full vectorial editing capabilities, and support for custom attribute relation models in the browser. It has built-in support for any type of query, selection, filtering, snapping, printing, ...

A java library for geometry applications. Provides a general framework for manipulating and creating geometric primitives, computing intersection points between shapes, composing them to create new shapes, and performing some measurements. Important note: the repository has now moved to GitHub: https://github.com/dlegland/javaGeom Please update bookmarks!

CorpusSearch finds syntactic structures in a corpus of annotated sentence trees. It can be used as a research tool on a corpus, or as a development tool for building the corpus.

DIVA-GIS is a geographical information system to analyze plant biodiversity data. It was developed at the International Potato Center (CIP) to help curate it's genebank data; additional support was subsequently obtained from IPGRI.

TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then.

Open Source GPS Tracking System. It allows to use mobile phones with J2ME support as mobile trackers and see its tracks on Google Maps online. There is a web RESTful API for GPS data input. See details on http://redmine.wannatrak.com

openSCADA is an open source Supervisory Control And Data Acquisition System. It is platform independent and based on a modern system design that provides security and flexibility at the same time. openSCADA is flexible. It is not an out of the box solution, but a set of tools that can be combined in many different ways. It provides development libraries, interface applications, mass configuration tools, front-end and back-end applications. openSCADA is ready to rock. It is used 24/7 in several installations around this world. openSCADA is supported. So if you prefer a fully supported, out of the box instead of a “build it yourself” solution you can contact IBH SYSTEMS GmbH and let us do the job. If you like, you will still get the source code that was developed specially for you. openSCADA needs you. Writing source code, writing documentation, fixing bugs or providing fresh input. Anything is welcome.

CERCA is an open-source research tool that supports the verification of bibliographic references in scientific manuscripts. It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control - Meta-research and reproducibility workflows CERCA is an experimental tool. It does not replace manual verification. CERCA is a Java desktop application built with JavaFX. To run it, you need a JRE that includes JavaFX, such as Azul Zulu JRE. Developed by: Lidiany Cerqueira, PhD Computer Science Researcher

GNU Gluco Control (GGC) is diabetes management application. It helps managing user's daily data, food data. Has graphs, statistics, printing, diabetes devices support (meter, pump, CGMS). It works on any platform supporting at least Java 5 (1.5). Our repo moved to GIT (click on tab Git Code), Lowest supported Java now is 1.8 and project code base is in process of redesign (updating libraries and ways how application is built and run). IMPORTANT: Project was moved to GitHub: https://github.com/andyrozman/ggc on 4th April 2024

OpenCCG, the OpenNLP CCG Library, is a collection of natural language processing components and tools which provide support for parsing and realization with Combinatory Categorial Grammar (CCG).

An open source implementation of the High Level Architecture Run-Time Infrastructure. Focused on modularity and flexibility, Portico provides an extensible environment to support HLA simulation development and research.

Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all

ALICE utilizes AIML (Artificial Intelligence Markup Language) to form responses to your questions and inputs. Unlike other commercial chat robot software costing thousands of dollars, ALICE is freely available under the terms of the GNU Public License

A high-performance implementation of the BACnet I/P and MS/TP protocol written for Java (minimum version 1.5) by Infinite Automation Systems. Supports all BACnet services and full message segregation. Can be used for field devices or for control platforms. For commercial licenses contact https://infiniteautomation.com/bacnet4j-open-source-bacnet-library/ The most recent code is here: https://github.com/infiniteautomation/BACnet4J For support see: https://forum.infiniteautomation.com/category/12/bacnet4j-general-discussion

ECMOjo is a simulator and trainer for extracorporeal membrane oxygenation (ECMO). ECMOjo consists of a graphical user interface to allow interaction and train ECMO practitioners.

GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features

Geo Arbores is a project for developing tools and extensions for the GIS software OpenJUMP

The virtual lab is a NASA-funded project to provide simulated instrumentation. ITG has developed a Virtual Microscope (Virtual SEM and LM) for viewing high-resolution, multi-dimensional image datasets. More info and data: http://virtual.itg.uiuc.edu

jQuantum is a Java program to simulate a quantum computer, to design quantum circuits, and to visualize the execution of quantum algorithms. Another main purpose, however, is to create images in your head, and thereby - understanding.

VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical mathematical formalism: Ordinary Differential Equation with Euler, Range-Kutta or QSS integrator, Finite state automaton (FDDEVS, UML State chart, Hybrid Petri net). The VLE environment provides an IDE to develop C++ models, DEVS coupled models. VLE have also three ports to use the VFL with Python, Java and R programming languages.

APBSmem is a Java-based graphical user interface for Poisson-Boltzmann electrostatics calculations at the membrane. APBS version 1.2.0 or later is required.

The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting.

Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.

Fachwerk3D calculates three-dimensional strut-and-tie models used by structural engineers for analysing and designing reinforced concrete structures. The program only uses the equilibrium conditions, thus it is not assuming elastic behaviour.