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SASHIMI

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★ 4.1 Stars (8)
126 Downloads (This Week)
Last Update:
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Screenshots

MS/MS spectral viewer ProteinProphet results TPP GUI main page PeptideProphet model viewer Sequence viewer pepXML viewer

Description

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

SASHIMI Web Site

Categories

Molecular Science, Chemistry, Bio-Informatics

License

GNU Library or Lesser General Public License version 2.0 (LGPLv2), GNU General Public License version 2.0 (GPLv2)

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User Ratings

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ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
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  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    A wonderful tool no doubt, but the project has left Linux users in the lurch. Version 4.8.0 has been a headache to install (see below *) and looking at 5.0.0, it looks like it's back to square one troubleshooting! (*) had to revert to gcc 4.8, which is not even available as package anymore in modern build, change "endform to end_form" in a perl module, changed paths in Proteowizard makefile, added "." to paths in Makefile, and quite a lot of the Apache config had to be adjusted !

    Posted 11/21/2016
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Don't use TPP 4.8 setup it is buggy.

    Posted 04/22/2015
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    great app, works nicely

    Posted 03/02/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    awesome!!

    Posted 02/28/2013
  • 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Very easy to use sashimi

    Posted 02/27/2013
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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Web-based, Command-line

Programming Language

Perl, C++, C, Java

Registered

2002-12-13

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