The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Features

  • Database Search Engines (comet etc.)
  • SpecraST (Spectrum Library Search Engine)
  • Open-mass Search (Magnum etc.)
  • Kojak (Crosslinking Search)
  • DDA Analysis
  • DISCo (DIA Analysis)
  • reSpect (Chimeric Spectrum Analysis)
  • MS1 and MS2 Quantitation Labelled and Unlabelled
  • Decoy Database Generation
  • PeptideProphet (PSM Level Validation)
  • iProphet (Peptide Level Validation)
  • PTMProphet (Post-Translational Modification Validation)
  • Protein Level Validation
  • Spectrum Library Generation
  • Data Visualization Tools
  • Retention Time Cataloging and Prediction

Project Samples

Project Activity

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License

GNU Library or Lesser General Public License version 2.0 (LGPLv2), GNU General Public License version 2.0 (GPLv2)

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SASHIMI Web Site

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