Open Source Java Scientific/Engineering Software - Page 15
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Java Scientific/Engineering Software
View 202 business solutionsBrowse free open source Java Scientific/Engineering Software and projects below. Use the toggles on the left to filter open source Java Scientific/Engineering Software by OS, license, language, programming language, and project status.
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The Napkin Look and Feel is a pluggable Java look and feel that looks like it was scrawled on a napkin. You can use it to make provisional work actually look provisonal, or just for fun.
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Java based astronomical logging software which stores it's data in a free and open XML based format (OpenAstronomyLog). Discontinued project: Please check out the fork: https://github.com/capape/observation-manager for an updated version
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Scene is a computer vision framework that performs background subtraction and object tracking, using two traditional algorithms and three more recent algorithms based on neural networks and fuzzy classification rules. For each detected object, Scene sends TUIO messages to one or several client applications. The present release features GPU accelerated versions of all the background subtraction methods and morphological post processing of the object blobs with dilation and erosion filters, implemented in OpenCL. The framework was mainly designed as a toolkit for the rapid development of interactive art projects that explore dynamics of complex environments. The Scene GUI runs and compiles under Windows, Linux, and MacOS X, and is available in both 32 bit and 64 bit versions.
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[DEPRECATED] Gene Ontology
The DEPRECATED legacy location of the GO, see http://geneontology.org
The DEPRECATED legacy of the Gene Ontology project on SourceForge. Please see http://geneontology.org for current software and downloads. -
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ALTER is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.
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Android Gps to Sms
Android Phone app that sends your GPS location in a SMS to a recipient
This app can be useful for you if you need to send your GPS location in an SMS to any recipient that is in your contact list (or a phone number that you can enter). The sent SMS contains a link to a Google Map with the position that you have sent. The app has been developed in french and english (US). -
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Arduino CNC Controller
APP for control a manual mill and obtain a CNC Mill
APP for Android 3.1 or greater to implement a CNC Controller that send orders using USB port to Arduino Mega 2560 R3 board to control 3 stepper motor to have a real CNC mill /// APP para Android 3.1 o superior para implementar un Controlador de CNC que envia ordenes usando el puerto USB a la placa Arduino Mega 2560 R3 para controlar 3 motores paso a paso para tener una fresadora de CNC real. -
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Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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DESMO-J is a framework for rapidly building discrete event driven simulation models in Java, which is not restrained to any particular domain of application. It supports both event-oriented and process-oriented modelling views. See http://desmoj.de.
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DimerRemover
Remove adapter dimers from NGS data
This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment. -
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FrEAK, the Free Evolutionary Algorithm Kit, is a toolkit to design and analyze evolutionary algorithms, written in Java.
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GeoRegression
An open source Java geometry library with a focus on 2D/3D space.
Geometric Regression Library (GeoRegression) is an open source Java geometry library for scientific computing with a focus on 2D/3D space. GeoRegression provides the ability to estimate the closest point/distance between geometric primitives, best-fit shapes, and best fit geometric transform between sets of objects. It is designed for high performance and ease of use. GeoRegression has been release under an LGPL license for both commercial and non-commercial use. -
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HermeneutiX
Your graphical tool for Syntactic/Semantic Structure Analysis of texts
HermeneutiX is a tool for diagramming syntactic and semantic structures of complex (not necessarily foreign-language) texts (e.g. bible or other historical excerpts). HermeneutiX is now part of SciToS (the scientific tool set). Starting with version 2.0.0, HermeneutiX can be found on GitHub. Please check out the release summary: https://github.com/scientific-tool-set/scitos/releases For an introduction, check out this video: https://youtu.be/uQjewyG0Ad8 PS: To run a Java application such as HermeneutiX (i.e. SciToS) you need a Java Runtime Environment (JRE). HermeneutiX is currently built to be compatible down to JRE version 6. You may download the current JRE here: http://www.java.com/en/download -
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IF97
Water & steam properties Java library
Steam tables for industrial use according to the international standard for the properties of water and steam, the IAPWS-IF97 formulation and the international standards for transport and other properties. Hummeling Engineering BV develops engineering software in the fields of thermodynamics, mechanics, hydrodynamics, and digital signal processing. -
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A web based information management system for macromolecular (protein) crystallography X-ray experiments. This project has moved to https://forge.ill.eu/projects/ispyb
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This project provides a java implementation of the Captcha project ( see http://www.captcha.net ). A CAPTCHA is a program that can generate and grade tests that: -Most humans can pass. -Current computer programs can't pass.
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JQM Java Quine McCluskey
JQM - Java Quine McCluskey for minimization of Boolean functions.
Java Quine McCluskey (JQM) implements the Quine-McCluskey algorithm with Petrick’s Method for minimizing Boolean functions. Designed for both education and industrial application, it handles up to 16 variables and functions. Uniquely, JQM bridges the gap between theory and practice: it visualizes the solution process with generated Karnaugh Maps for students, while supporting PLC engineers by exporting results to Structured Text (ST) and Ladder Diagram (LD). The software includes a GUI for managing truth tables and supports diverse file formats for import and export. -
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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Knowtator is a general-purpose text annotation tool that is integrated with the Protégé knowledge representation system. Knowtator facilitates the manual creation of training and evaluation corpora for a variety of biomedical language processing tasks.
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LogicAnalyzer is a framework as well as an application to operate a PC based logic analyzer. It's built using the Eclipse RCP and designed with extensibiliy in mind. Integrating new devices or creating completely new functionality is easy.
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The class libraries here provide infrastructure for creating simulations of low energy nuclear physics experiments, as well as some useful working programs that do simple simulations and analysis of experiments performed with magnetic spectrographs.
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This project provides a analog / mixed signal IC schematic capture and layout tool with the accompanying netlisters, simulators, and verification tools.
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OpenAOS is a open source project of a platform independent and distributed service for accessing measurement data over a standarisized interface (ASAM ODS) defined by ASAM e.V. (for details please visit standards at www.asam.net).
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PPIXpress
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 .
