Open Source Java Scientific/Engineering Software - Page 16

LTI-Lib is an object oriented computer vision library written in C++ for Windows/MS-VC++ and Linux/gcc. It provides lots of functionality to solve mathematical problems, many image processing algorithms, some classification tools and much more...

LABB-CAT is a browser-based linguistics research tool that stores recordings and regular-expression searchable text transcripts of interviews. The search results, entire transcripts, and media, can be viewed or exported in a variety of format

A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.

Additional dictionary files for the NetBeans spellchecker.

Open source, cross platform drivers and function library for the NovInt Falcon Haptic Controller. These drivers are not produced by Novint Technologies, Inc. and do not come with any warranty as to their correctness or usage.

This project provides a analog / mixed signal IC schematic capture and layout tool with the accompanying netlisters, simulators, and verification tools.

TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then.

Edit equations right on the screen with your mouse, and never make a mistake. Guide the program through any complex algebraic manipulation, and let it handle the tedious details. Many other features!

123FASTQ performs the preprocessing of Illumina next-generation sequencing reads (FASTQ files), making the workflow easier and more accessible than ever. Download the quick user manual for the latest version: https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf **Authors:** Milad Eidi Samaneh Abdolalizadeh Mohammad Hossein Nassirpour **Supervisors:** Javad Zahiri, PhD University of California San Diego Masoud Garshasbi, PhD Tarbiat Modares University, Tehran, Iran If you use 123FASTQ, please cite the following preprint: **123FASTQ: an intuitive and efficient tool for preprocessing Illumina FASTQ reads** https://www.biorxiv.org/content/10.1101/2024.03.08.584032v1 **Important:** From now on, all future updates, releases, and related information for 123FASTQ will be made available through the project's GitHub page. https://github.com/MiladEidi/123FASTQ

Algorithmic Trading implementation

BioStream enables bioinformatics researchers to create, query and apply tools to their own databases. It supports sequence files and other data types by allowing the creation of metadata definition files.

Bobcat Open Source Software is an umbrella project of a number of open-source software projects developed at Ohio University, including, among others, a distributed process management system, a meeting scheduling tool, and a performance evaluation tool.

Calcoo is a scientific calculator (with both RPN and algebraic modes) designed to provide maximum usability.

The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org

The GPS Simulator simulates a GPS receiver which emits NMEA sentences over Bluetooth. It can be used to test location based applications on real mobile devices, in particular on mobile devices which have a JSR 179 implementation based on a connected GPS.

GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview

GridABM is an easy-to-use toolkit to develop high-performance agent-based models (ABMs) in Repast. GridABM facilitates large-scale simulation of ABM on multicore computers, local computing clusters, or computational grids.

A version aware Java API to Ensembl data systems.

JMathLib is used to evaluate complex mathematical expressions and display the results graphically. It can be used either interactively or to interpret script files (m-files). It is a clone of Matlab, Octave, FreeMat, Scilab but written 100% in java.

The JSky package contains java classes for displaying astronomical images, searching astronomical catalogs and plotting catalog symbols on images. The jskycat application is also included and makes use of most of the features.

Knowtator is a general-purpose text annotation tool that is integrated with the Protégé knowledge representation system. Knowtator facilitates the manual creation of training and evaluation corpora for a variety of biomedical language processing tasks.

RHINO parses Korean words by morpheme and part-of-speech. Its dictionaries are based on Korean Modern Tagged Corpus(12 million phrases scale) which was made by Korean government. So it analyses many cases of stems and endings. And the newly developed Dynamic Dictionary Technology can make words to react with their context. That is, a programmed database. For more information see the files in the help folder.

ORIPA S is a drawing tool specifically designed for a origami crease pattern. It is derived from ORIPA which is developed by MITANI Jun. New features by ORIPA S are: - save current crease pattern as a image file (jpeg, png) not only original project file. - while pasting, select a point on pattern to be matched against destination point. - Some considerable bugs are fixed (i.e., wrong undo behavior on ORIPA v0.35). This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

OpenCCG, the OpenNLP CCG Library, is a collection of natural language processing components and tools which provide support for parsing and realization with Combinatory Categorial Grammar (CCG).

The purpose of this project is to provide a means to use RePast in the Jelly XML Scripting Language. This library will provide a means to design, manipulate and excute a Repast Model with the entire model capable of being defined within an XML document.