Open Source Scientific/Engineering Software - Page 77
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Scientific/Engineering Software
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Cut Data Warehouse Costs by 54%BigQuery delivers 54% lower TCO with exabyte scale and flexible pricing. Free migration tools handle the SQL translation automatically.
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eavref
A tool for low-power CMOS voltage reference designs
EAVREF is a computer-aided tool for robustly designing ultra-low-power CMOS voltage references. The tool is compatible with the powerful Ngspice simulator, enabling open-source microelectronics design flow with SkyWater 130nm Technology. -
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epics-sequencer-HZB
The EPICS SNL Compiler and Sequencer
The Sequencer implements a language for programming state machines with the EPICS framework. EPICS is developed collaboratively and used worldwide to create distributed soft real-time control systems for large scale scientific instruments. SNL borrows most contructs from the C programing language and adds some new statements for defining states and conditions for transitions between states. -
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ijTools
A set of plugins and tools for ImageJ (Image processing sofware)
A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay). -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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ismrmrd
ISMRM Raw Data File Format
We have moved to GitHub. web: http://gadgetron.github.io code: http://github.com/gadgetron/gadgetron discussion board: https://groups.google.com/forum/#!forum/ismrmrd -
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minfx
Minfx optimisation library
The minfx project is a Python package for numerical optimisation, being a large collection of standard minimisation algorithms. The name minfx is simply a shortening of the mathematical expression min f(x). -
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mySolarProjects
my Solar Projects using Arduino
A number of Solar projects for users doing Solar Imaging. Solar Scintillation Monitor - monitor solar seeing conditions in real-time Getting rid of Newton Rings Making a FLATS device for imaging the Sun -
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nutshell
A GUI for the freeware Geographical Information System PCRaster
A GUI for the freeware Geographical Information System PCRaster. This is an independent development. It uses the conda installation of PCRaster and can also use GDAL. Mapedit has been completely renewed. The GIT repository is available linked to PCRaster and available here: https://sourceforge.net/projects/pcraster/ Mapedit code : https://github.com/vjetten/MapEdit NutShell code: https://github.com/vjetten/NutShell The code is currently compiled for windows systems but is tested under ubuntu. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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A tool to automate the generation of keypoint matches in a set of images that can be blent into a panorama. This tool is meant to be called from various Panorama generation tools like Hugin or PTGui.
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PileWorks provides the organizational structure for coordinating several different projects which approach some aspect of Pile Technology. PileWorks defines a set of interfaces and implements some basic infrastructure for Pile engines and agents.
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pipestatus - source file for UNIX/POSIX shell that allows to obtain an exit status of every program in a pipe.
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plot.py
direct data plotting and evaluation
The Plot.py project tries to supply a measurement data visualization and treatment framework being easy to use while keeping the freedom for advanced users to execute additional data treatment algorithms. Plotting is done via gnuplot and the script used to produce the graphs can be exported for later use/changes. Many raw experimental data types (mostly of x-ray and neutron scattering experiments) are supported with more to be added on user request. The data treatment includes non-linear fitting, integration and differentiation, peak-finder and more. User python code can be executed in the integrated IPython console. -
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rMATS-ISO
rMATS-Iso is a generalization of rMATS for complex splicing patterns.
rMATS-Iso is a generalization of the rMATS statistical framework, to detect differential splicing modules with complex splicing patterns using replicate RNA-seq data. -
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Sampsize computes sample size and power for surveys, comparative studies including non-inferiority trials and case-control studies.
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vision2
Binocular vision examination using shutter glasses
Vision2 serves as tool for ophthalmologists and other vision testing professionals. It's useful for a variety of ophthalmology testing applications related to stereo vision. It implements many of classical tests but also new types of vectographic and random dot exams. Program was created as part of diploma thesis in Wroclaw University of Technology in Poland. -
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5dpo Components for Lazarus
5dpo Components for Lazarus
5dpo Component Library for Lazarus (Sdpo) provides a comport (serial port) component, an UVC video driver component for webcams, a Gtk fast painting form and a Joystick component. -
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Earth3D is a program to display the earth as a 3D globe (including heightfields) in real-time. One can zoom until cities become visible. It uses huge datasets that are loaded on demand over the internet. It is possible to embed dynamic data into the view
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The Free Connectionist Q-learning Java Framework is an library for developing learning systems. Keywords: qlearning, artificial intelligence, alife, neural nets, neural networks, machine learning, reinforcement learning unsupervised learning agents lejos
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FastFlow: programming multi-core
Pattern-based multi/many-core parallel programming framework
FastFlow is a C/C++ programming framework supporting the development of pattern-based parallel programs on multi/many-core, GPUs and distributed platforms. FastFlow run-time is built upon non-blocking threads and lock-free queues. Thanks to its very efficient CAS-free communication/synchronization support (e.g. few clock cycles core-to-core latency), FastFlow effectively supports the exploitation of fine grain parallelism, e.g. parallel codes managing very high frequency streams on commodity multi-core. FastFlow works on x86, x86_64, PPC, ARM, and Linux, Mac and Win XP/7. From Jan 1, 2018 code development migrated on GitHub at https://github.com/fastflow/fastflow -
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HeatmapGenerator is a graphical user interface software program written in C++, R, and OpenGL to create customized gene expression heatmaps from RNA-seq and microarray data in medical research. HeatmapGenerator can also be used to make heatmaps in a variety of other non-medical fields. HeatmapGenerator is peer-reviewed published software (http://www.scfbm.org/content/9/1/30). Please cite: [Khomtchouk et al.: "HeatmapGenerator: High performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline." Source Code for Biology and Medicine, 2014 9:30] HeatmapGenerator source code is available at: https://github.com/Bohdan-Khomtchouk/HeatmapGenerator Bohdan Khomtchouk wishes to acknowledge the support of the Department of Defense (DoD) through the National Defense Science & Engineering Graduate Fellowship (NDSEG) Program. HeatmapGenerator is released under the GNU GPL.
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JWNL is a Java API for accessing the WordNet relational dictionary. WordNet is widely used for developing NLP applications, and a Java API such as JWNL will allow developers to more easily use Java for building NLP applications.
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RawGeno Version 2.0-1 is released! RawGeno is an R CRAN library automating the scoring of AFLP electropherograms. The library includes a graphical user interface to simplify its use. Note that the 2.0-1 version is delivered as a source (*.tar.gz for Linux and Mac users) and as a binary file (*.zip, for Windows users). The installation procedure differs slightly according to your system; but this should remain simple. Have a look at the readme file when you download your new copy from https://sourceforge.net/projects/rawgeno/files/rawgeno/RawGeno%202.0-1/ Make also sure to have a look at https://sourceforge.net/projects/rawgeno/files/ where you can find a detailed manual, demo datasets and many demo scripts.
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The Tolven platform and ePHR and eCHR applications enable interoperability across electronic health records for consumers and clinicians. Using Java, EJB3, Faces, Facelets, AJAX, relational database, and LDAP for security.
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GaiaEHR
Electronic Health Record (EHR / EMR)
GaiaEHR(Electronic Health Records) is a Open source Web-Based Software for: Medic Practice management Electronic Medical Records Prescription writing and medical billing application And it can be installed on the following systems: Unix-like systems (Linux, UNIX, and BSD systems) Microsoft systems Mac OS X And other platforms that can run Apache Web server, MySQL We have some other projects here in GaiaEHR.org, some private and other are GPL'd. Demo: http://gaiaehr.org/demo/ user: admin password: pass