Open Source Scientific/Engineering Software - Page 75
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Scientific/Engineering Software
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XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
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MobTracker
Android Mobile Tracking Platform
Android Mobile Phone Tracking Platform merging sourceforge projects: https://sourceforge.net/projects/gpsmapper/ & https://sourceforge.net/projects/gpsinfo/ Android mobile GPS/Network location sended to server. Two kinds of viewers: 1. Google maps 2. NASA WorldWind -
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NetStress-NG
NetStress is a DDoS and network stress testing tool.
Syn Flood Attacks SYNFlood with static source port SYNFlood with random source port SYNFlood with static source ip address SYNFlood with random source address SynFlood with fragmented packets ACK Flood Attacks ACK Flood with static source port ACK Flood with random source port ACK Flood with static source ip address ACK Flood with random source address ACK Flood with fragmented packets FIN Flood Attacks FIN Flood with static source port FIN Flood with random source port FIN Flood with static source ip address FIN Flood with random source address FIN Flood with fragmented packets UDP Flood Attacs Static source port udp flood UDP flood with random source port UDP Flood with static source ip address UDP Flood with random source address UDP Flood with fragmented packets ICMP Flood ICMP Flood with all options random(source ip, icmp type, code) HTTP Flood ... More info: http://sf.net/p/netstressng/wiki/Home/ -
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This project provides a analog / mixed signal IC schematic capture and layout tool with the accompanying netlisters, simulators, and verification tools.
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PAIDA is pure Python scientific analysis package and supports AIDA (Abstract Interfaces for Data Analysis). PAIDA can create/plot histograms and functions etc. The parameter optimization and its error evaluation are also supported. Can use with Jython!
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PLEXIL (plan execution software)
Plan execution language and executive
NOTE: Since 2022 this hosting of PLEXIL is deprecated. PLEXIL has moved to GitHub at https://github.com/plexil-group/plexil. Documentation is found at https://plexil-group.github.io/plexil_docs. Please use these new locations. PLEXIL is a plan execution language and technology developed by NASA and used in automation and autonomy applications at NASA and in the public sector. This software includes compilers for the language, the executive (runtime environment), and related tools. It runs on Unix-based computers, including macOS and Linux. -
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PUMA Repository
Pascal Units for Medical Applications
The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable source code for a wide field of health-care application development. The code includes a support engine for the European Data Format (EDF and EDF+), converting functions for units of measurement and an HL7 engine. PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers. -
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Powersim
Energy Estimation in SystemC.
Power/Energy simulation in SystemC. Powersim is a SystemC class library aimed to the calculation of power and energy consumption of hardware described at system level. To this end C++ operators are monitored and different energy models can be used for each data type. Powersim does not require any change in the application source code. Current version is 0.3.0. -
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Qgama
Adjustment of local surveying networks, binary builds for Windows
The archive has been moved to https://ftp.gnu.org/gnu/gama/windows/ GNU Gama is a project dedicated to adjustment of geodetic networks. It is intended for use with traditional geodetic surveying which are still used and needed in special measurements (e.g., underground or high precision engineering measurements) . Qgama is a Qt based user interface for GNU Gama adjustment of geodetic networks in which XML input is complemented with a database. The most simple case is Sqlite3 file database, which does not need any special knowledge from the user. http://www.gnu.org/software/gama/qgama Command line program gama-local is distributed with Qgama in folder bin. -
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Quantum Mechanical Toolkit And 3D Viewer for C++. Allows Data Visualisation via Images, Surfaces and Volume plots using OpenGL, as well as rapid development Quantum Mechanical Simulations. Uses the Blitz++, VTK Visualisation and Qt Libraries.
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % Curitiba – PR % Brazil % % Developers and colaborators: % Roberto T. Raittz % Bruno T. L. Nichio % Ricardo A. Vialle % Aryel M. R. de Oliveira % Camilla R. Pierri % Leticia G. C. Santos % Alexandre Q. Lejambre % Nilson A. R. Coimbra % Dieval Guizelini % Jeroniza N. Marchaukoski % Fabio de O. Pedrosa -
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RFXCAM
A CAD/CAM Package for CNC GCode Creation
RFXCAM is an opensource CAD / CAM package targeted at CNC machines (Mills, routers...). The idea is to create the basic interface for geometry manipulation and toolpath creation. Heavy python plugin support will allow a future community to create a vast selection of unique plugins for added functionality specific to their needs. Tutorial 1: https://www.youtube.com/watch?v=bNvE2H8b6Yc&feature=youtu.be -
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Rabiscoscopio
Draw images on your oscilloscope screen
Draw images on your oscilloscope screen More info at project page: http://alexporto.com/rabiscoscopio -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. Computer Methods and Programs in Biomedicine, 118(2):95–106, 2015. (b) F. Piccinini, et al., Single-image based methods used for non-invasive volume estimation of cancer spheroids: a practical assessing approach based on entry-level equipment. Computer Methods and Programs in Biomedicine, 135:51-60, 2016. -
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Robean
Rodent Neurobehavioral Analysis Software
Robean is a standalone freeware application for automated rodent neurobehavioural analysis. The software provides an intuitive graphical interface for analysing Morris Water Maze, Elevated Plus Maze, and Open Field Test experiments from prerecorded videos or live camera feeds. Robean integrates arena definition, zone management, centroid tracking, trajectory visualization, occupancy heatmap generation, automated PDF reporting, and batch study summaries within a single desktop application requiring no programming expertise. -
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Robotinics
robotic project
O Robotinics é um projeto para construção de um robô autonomo. São características do Robotinics: - Integração de Arduino e Raspberry para gerenciamento das suas funcionalidades - Projeto totalmente open source e open hardware - Baixo custo . O Robotinics esta sendo utilizado como base para projeto mecânico no curso da ETEC Ribeirão Preto - Brasil e toda a concepção e modelagem de suas partes mecânicas serão apresentadas como trabalho acadêmico para este fim. The Robotinics is a project to build an autonomous robot. Are characteristic of Robotinics: - Integration of Arduino and Raspberry Management of its features - Project completely open source and open hardware - Low cost of production The Robotinics is being used as the basis for mechanical design in the course of ETEC Ribeirao Preto - Brazil and across the design and modeling of its mechanical parts are presented as academic work for this purpose. -
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Root Phenotyping Suite
Three different software tools for phenotyping plant root images
RootAnalyzer is a fully automated tool, for efficiently extracting and analyzing anatomical traits from root-cross section images. RootAnalyzer segments the plant root from the image's background, classifies and characterizes the cortex, stele, endodermis and metaxylem, and produces statistics about the morphological properties of the root cells and tissues. RTipC is a system for the fully automated detection and classification of root tips in root images obtained either by 2d flat bed scanning or by 3D digital camera imaging. The software provides a robust, efficient and accurate means of phenotyping of roots, by detecting individual root tips and classifying them as belonging to a primary or lateral root. RootGraph is a novel, fully automated and robust approach for the detailed characterization of root traits, based on a graph optimization process. The scheme, firstly, distinguishes primary roots from lateral roots and, secondly, quantifies a broad spectrum of root traits. -
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SIxO
Multipurpose Vehicle Computer
SIxO is a software project for odometer, tripcounter and multimeter, suppporting many more features for any kind of vehicle. The essential microcontroller hardware (Renesas M16C, graphical display 128x64, casing, keyblock) can be ordered at www.sixo.de. -
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STRIKER-GUI
Refine the spectral library to enhance its completeness and coverage.
STRIKER is a tool for correcting spectra with missing or incorrect adduct annotations. It also enables efficient construction of an HMDB-based spectral library and extraction of sublibraries from large spectral libraries. -
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SimThyr
A simulation program for thyroid homeostasis.
SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients. -
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SolTrack
A free, fast and accurate routine to compute the position of the Sun
SolTrack is a simple, free, fast and accurate C/C++ routine to compute the position of the Sun. The code can be used to track the Sun on low-specs machine, such as a PLC or a microcontroller, and can be used for e.g. (highly) concentrated (photovoltaic) solar power. SolTrack has been developed by Marc van der Sluys, Paul van Kan and Jurgen Reintjes, of the Lectorate of Sustainable Energy at the HAN University of Applied Sciences in Arnhem, The Netherlands. The code is based on the astronomical Fortran library libTheSky and can be used, modified and distributed under the conditions of version 3 of the GNU Public Licence.