Open Source Scientific/Engineering Software - Page 36
Sort By:
Scientific/Engineering Software
View 202 business solutions-
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
-
Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
-
1
This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework. medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0. MedTime is licensed under GNU General Public License version 3.0 (GPLv3). cTAKES development has moved to apache.org. See http://ctakes.apache.org/
-
2
The Simplest Manual Counter
Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it! -
3
VisTrails is a new scientific workflow management system developed at the University of Utah that provides support for data exploration and visualization. Written in python, it has a visual programming interface for many libraries, including VTK.
-
4
-
$300 Free Credits to Build on Google CloudPut your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.
-
5
newRPL
The classic RPL programming language reimplemented and reimagined.
This project reimplements from scratch the RPL language made popular by HP programmable calculators, in portable C/C++. The main goal is to release a complete computing environment for various targets. There's currently 4 active targets: the HP 50g, HP39gs and HP40gs calculators and a PC simulator (see the downloads section!). Other ports are planned for the future. -
6
-
7
NCO netCDF Operators
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links. -
8
AtomicJ
Application for analysis of AFM data
AtomicJ is an application for analysis of force microscopy recordings, including images and force curves. It allows for fast and reliable processing of single force curves and force maps, providing estimation of the mechanical properties of the sample. AtomicJ supports a wide range of contact mechanics models, including the models for blunt tips, the corrections for the effect of finite sample thickness, models of adhesive contact and models of spherical indentation of hyperelastic material. It implements novel procedures for analysis of force curves which allow for greater resistance to model deviations. AtomicJ can process force maps, it generates maps of Young’s modulus, adhesion force, transition indentation, sample height and the deformation. The results of force maps processing can be visualized in 3D. -
9
CPAT
RNA coding potential assessment tool
Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC , PhyloCSF and RNACode ). This is because most previously identified transcripts including protein coding RNA and short, housekeeping/regulatory RNAs such as snRNAs, snoRNA and tRNA are highly conserved. While still very useful, these approaches have several limitations: Most lncRNAs are less conserved and tend to be lineage specific which greatly limit the discrimination power of alignment-based methods. For example, of 550 lncRNAs detected from zebrafish, only 29 of them had detectable sequence -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
-
10
Comet MS/MS search engine
Comet open source tandem mass spectrometry (MS/MS) search engine.
September 2021: the code repository has migrate to https://github.com/UWPR/Comet Comet is an open source tandem mass spectrometry (MS/MS) sequence database search engine. It identifies peptides by searching MS/MS spectra against sequences present in protein sequence databases. Comet currently exists as a simple Windows or Linux command line binary that only does MS/MS database search. Supported input formats are mzXML, mzML, ms2, and Thermo RAW files. Supported output formats are tab-delimited text, Percolator pin, SQT, and pepXML Documentation and project website: http://comet-ms.sourceforge.net -
11
DAE Tools Project
Object-oriented equation-based modelling and optimisation software
DAE Tools is a cross-platform equation-based object-oriented modelling, simulation and optimisation software. It is not a modelling language nor a collection of numerical libraries but rather a higher level structure – an architectural design of interdependent software components providing an API for: - Model development/specification - Activities on developed models, such as simulation, optimisation, sensitivity analysis and parameter estimation - Processing of the results, such as plotting and exporting to various file formats - Report generation - Code generation, co-simulation and model exchange The following class of problems can be solved by DAE Tools: - Initial value problems of implicit form - Index-1 DAE systems - With lumped or distributed parameters - Steady-state or dynamic - Continuous with some elements of event-driven systems -
12
Ethernet POWERLINK XDD Tool Suite
Provides eclipse plugins for XDD edit, validation and OD generation.
The plugins include functionality to edit and check CN / MN XDD / XDC files against the DS311 V1.2.0 and the DS 301 1.3.0 specification. Another plugin enables the user to generate the object dictionary header file from an XDD / XDC file for the openPOWERLINK (https://goo.gl/Cg77Oi) implementation. Please note that the validation functionality works properly for Controlled and Managing Node XDD / XDC files. Please use the update site to install the plugin in your eclipse environment: http://sourceforge.net/projects/xddpluginsuite.openconf.p/files/update_site/ User Manual: https://goo.gl/hvtLAq XDD editor plugin user manual: https://goo.gl/Fo5pUQ Install via Eclipse marketplace: https://goo.gl/eAZAn9 Link to the openCONFIGURATOR parent project: https://sourceforge.net/projects/openconf/ -
13
GenReg
Generation of regular graphs
Efficient, complete and non-redundant generation of regular graphs as described in M. Meringer: Fast Generation of Regular Graphs and Construction of Cages. Journal of Graph Theory 30, 137-146, 1999. -
14
-
15
SBW (Systems Biology Workbench)
Framework for Systems Biology
The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as SED-ML, SBML and MIRIAM. -
16
-
17
GridLAB-D is a new power system simulation tool that provides valuable information to users who design and operate electric power transmission and distribution systems, and to utilities that wish to take advantage of the latest smart grid technology. It incorporates advanced modeling techniques with high-performance algorithms to deliver the latest in end-use load modeling technology integrated with three-phase unbalanced power flow, and retail market systems. Historically, the inability to effectively model and evaluate smart grid technologies has been a barrier to adoption; GridLAB-D is designed to address this problem. User documentation can be found at: http://gridlab-d.shoutwiki.com/wiki/Quick_links The source code is available from GitHub. See https://github.com/gridlab-d/gridlab-d. Issue tracking is handled by GitHub. See https://github.com/gridlab-d/gridlab-d/issues.
-
18
myFP2ESP32-Dev WiFi ASCOM Focuser
ASCOM-INDI ESP32-Dev Wifi focuser
An ESP32-Dev WiFi focuser. DIY or PCB designs. (c) Robert Brown 2014-2025, Holger M, 2019-2021. All rights reserved. Code or portions of code may not be copied or used without appropriate credit given to authors. Spreadsheet to calculate what stepper motor to use. https://sourceforge.net/projects/arduinoascomfocuserpro2diy/files/Documentation/Nema-Stepper-Motors.xlsx/download Spreadsheets to calculate CFZ https://sourceforge.net/projects/myfocuserpro2-esp32/files/CFZ%20Spreadsheets/CFZ%20Spreadsheets.zip/download Focuser Basics Guide (PDF) - shows how to derive the correct motor requirements for your system (mandatory reading) https://sourceforge.net/projects/myfocuserpro2-esp32/files/Documentation/Focuser%20Basics.pdf/download Part1: Download, Configuration and Programming https://youtu.be/90KeSspN3e0 Project is superceded by myESP32S3-N16R8 WiFi Focuser -
19
Framewave is a collection of popular image and signal processing routines designed to accelerate application development, debugging, and optimization on x86-class processor platforms.
-
20
Halo extension to Semantic MediaWiki SMW
The Halo extension extends MediaWiki and Semantic Mediawiki
Semantic web technologies and wiki paradigms are combined with advanced user interfaces for browsing, editing and maintenance. SMW+ Community edition: Installer includes PHP, MySQL, MW, SMW and Halo extension Community and User Manuals on http://www.smwplus.net -
21
The virtual lab is a NASA-funded project to provide simulated instrumentation. ITG has developed a Virtual Microscope (Virtual SEM and LM) for viewing high-resolution, multi-dimensional image datasets. More info and data: http://virtual.itg.uiuc.edu
-
22
EtiC Galaxy simulation
Galaxy extraterrestrial life simulation
EtiC is a galaxy simulation software that generates and renders a mock galaxy for rational estimation of the number of extraterrestrial civilizations. Stars and planets are simulated with plausible physical characteristics, based on user-adjustable parameters. An EtiC simulation run consists to generate a galaxy disk physical stars, associate planets to the stars, and for habitable planets, simulate the life stages evolution until extinction. A visual animation of the galaxy and user selection of highlighted star-planet objects is provided, together with statistics (25+ graphs) and estimates of Drake equation factors. The V2_1 provides several new features: planets surface magnetic field, reworked life stage transitions, integration of MW exoplanets catalog, planets view and graphs window optionally on different threads... EtiC is based on OpenGL / GLFW 3.2, runs on MSWindows 7 and MacOsX. Source code in C++, was developped using the Dev-C++ IDE and XCode. -
23
Karto
Tool to work on map data, to check the data and generate your own maps
Karto allows to calibrate a scanned map (or aerial photos) with some known geo-points (Lambert, UTM, ...). After that, you can add any points (GPS points) in the map to build your own map. You can also add a transparent GIF image in the map after calibration (cave, mines, roads, ...). You can realize your own cartes with the data you add inside adding/showing/hiding layers of data. You can import/export your data files (after checking and correcting them) in differents formats. -
24
Night Vision
Night Vision is a "planetarium" program written in Java
Night Vision is a "planetarium" program that will display the heavens from any location on earth. Viewing options allow the user to control which sky objects to display, which font to use, and manipulation of various star parameters. Time may be set to run at multiple speeds, including backwards. Star charts may be printed. Night Vision is written in Java, allowing it to run on all major desktop systems (includes PCs, Macs, Linux, ...). It has been designed to be readily translatable into other languages. Additionally a port of Night Vision's Solar System window has been ported from Java to the Rust programming language, providing executables that can run directly on the host operating system. -
25
conducteo
conducteö - logiciel de calcul des ponts thermiques linéiques
conducteö est un logiciel de modélisation et de simulation des ponts thermiques linéiques, conforme à la RT 2012 et aux principales normes européennes concernant les ponts thermiques. Code source : https://github.com/c-marcel/conducteo Installeurs Linux/Debian et Windows : https://github.com/c-marcel/conducteo/releases Installeurs macOS : https://github.com/Neocle/conducteo/releases/tag/macOS
