Search Results for "data quality" - Page 23
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Showing 888 open source projects for "data quality"
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MendelChecker
QC for variant discovery from next gen sequence in pedigrees
MendelChecker is a likelihood-based measure of Mendelian segregation of Single Nucleotide Polymorphisms (SNPs) in nuclear pedigrees. We developed this method as a quality control measure for novel variant discovery from noisy next-generation sequencing data in pedigrees, such as Restriction site-associated DNA Sequencing (RAD-seq) in non-model organisms. This method implements comparison of heterogametic vs. homogametic transmission, i.e., sex linked vs. autosomal segregation. -
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TestMP
Test Management Platform for Automation
TestMP is a test platform facilitating the management of automation test cases, data, environments in an automated way. It has the following features: 1. Instant Update of Test Case Doc & Status Document test cases just in code, and no longer bother to maintain them in another place. The web console will instantly update test document and measures upon test run. 2. Auto-generation of Metrics Report to Signoff Test robustness, effectiveness, and efficiency are evaluated into a... -
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AWK Statistics
awkStatistics generates statistics from csv-data with awk.
AwkStatistics is a script which is used to generate statistical data for csv data by using awk. It takes two columns from the input file, one is used to identify the row(option -i) and the other one is the column where the values are taken from (option -v). The script was designed for performance engineers to be able to analyze CSV-Data on the fly and have a good possibility to automate the analysis process. -
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The Apelon DTS (Distributed Terminology System) is an integrated set of open source components that provides comprehensive terminology services in distributed application environments.
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Avicenna
Location Data Visualisation and Editing
Avicenna is an application for visualizing location data stored in excel or .csv table files on a map or in a table view. It provides several export functions (such as single pictures, database dumps and even a HTML-export that enables you to use Avicenna on your website). It was developed as part of the course "Techniken der Projektentwicklung" in summer semester 2012 at the University of Bielefeld by Team 2 and is licensed under the GNU Affero General Public License version 3. This... -
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CoDeCZ
Derive copy number status from targeted sequencing data
CoDeCZ derives copy number state from targeted sequencing data on gene or exon level. Results are NOT true copy number however, but they are semi-quantitative: It uses the modified z-score to calculate deviation in normalized coverage per specified region. The higher the Z-score, the higher the copy number. The final z-score depends on the quality of the data and the makeup of the reference pool. -
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CHANCE-HT
ChIP-seq data pre-processing software
CHANCE-HT is a ChIP-seq pre-processing software that filters samples with weak IP-strength, identifies heavily biased control experiments and under sequenced samples, detects batch effects, and normalizes large ensembles of ChIP-seq datasets. CHANCE-HT uses a parallel processing approach to normalize and filter large collections of ChIP-seq datasets in tandem. -
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Scripture
Biblical Data-Research Tool
the real is finite; the irreal is infinite. The unreal is bigger than infinite. real is the physical; irreal is the possible. Unreal is the incoherent, useless, meaningless, insane.. all religions offend me, when someone tries to sell me their delusions. when someone say i can't have morals without religion. when someone doesn't hold others to their level just because of a iron age book. when they refuse to understand why faith is harmful. when they kill and hate for their imagenary gods.... -
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DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
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Bycom
Bycom can do methylcytosine calling (5mC calling) from BS-seq.
Bycom can do methylcytosine calling from BS-seq (WGBS and RRBS), and either unmapped reads (FASTQ) or mapped reads (SAM/BAM) could be permitted for the input data. Certain SNPs (C>A/G) can also be selected in the output. 1. There's no softwares or methods identify methylcytosines considering the cell heterozygosis caused by multicellular sequencing. Bycom introduced it along with the sequencing errors and unconverson rate based on the Bayesian model. 2. Several parameters in Bycom could be set as what the users want to, such as depth threshold, quality control value, conversion rate, processor number. 3. ... -
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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Seal
A toolkit for distributed processing of HT sequencing data.
...Currently Seal includes tools for: read demultiplexing, read alignment, duplicate read removal, sorting read mappings, and calculating statistics for empirical base quality recalibration. Seal scales, easily handling TB of data. -
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CAPE RNA
Classification based Analysis of Paired Expression data of RNA
CAPE RNA is package of command-line tools for integrated analysis of miRNA-mRNA expression data. miRNA-mRNA interaction states are assigned for each sample independent of a priori known experimental groups. Using these interaction classifications Jaccard-indexes are calculated to evaluate the quality of a predicted interaction based on the distribution of assigned interaction states compared to experimental groups. In addition, negative correlation between miRNA and mRNA expression can be analyzed. -
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GraFIX is a software and a method to detect fixations in low and high quality data, consisting of a two-step process in which eye-tracking data is initially parsed by using adaptive velocity-based algorithms, before it is hand-coded using the graphical interface, allowing accurate and rapid adjustments of the algorithms' outcome. GraFIX is released under the GPLv3 public license (http://www.gnu.org/licenses/).
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Prober
Probe is simple yet effective PHP Mysql database class.
Probe is simple yet effective PHP Mysql database class. The crispy yet short code occupies less memory and carrying you to heights of quality operations. The present version of Probe is “1.0”. You can perform basic CURD operations in easiest way. It is designed in PHP. It has got a very easy format to operate with and make your web pages dynamic. A short yet clear documentation is provided, so that you can learn and code within few minutes. -
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FAT-FREE is a powerful and lightweight PHP 5.3+ Web application framework designed to help you build dynamic and robust Web sites - fast! Unlike other PHP frameworks, Fat-Free aims to be usable - not usual.
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OpenCMISS-Zinc
A Library for Interactive Modelling and Visualisation
The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications. Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image... -
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Scertify - TechDebt Community
Benchmark code quality and measure Technical Debt of projects in Sonar
Scertify™ Refactoring Assessment is an open source component dedicated to development & QA teams that provides exclusive benchmark data on Software Quality. It automatically detects the portions of an application that can be refactored, gives valuable information on refactoring strategies, and costs. Though IT departments have matured these last 10 years and have now no doubt on the benefits of a continuous control of code quality, three major concerns were still remaining, without any tools able to effectively addressing these needs: * How to understand quality indicators, and how to compare them with the state of the art? ... -
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A free, industrial quality library for simulating articulated rigid body dynamics - for example ground vehicles, legged creatures, and moving objects in VR environments. It's fast, flexible & robust. Built-in collision detection.
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A Data Generator
A tool to generate synthetic test data useful to Record matchers
With growing amount of information from multiple sources it has become very hard to relate information to the correct real life entities. Record matching software try to solve this by machine learning techniques. To do this effectively, its necessary to train the record matcher with proper test data which is identical to real life data. Hence, there is a need for a data generator to create the synthetic data to be used for evaluating the quality and capability of record matching software. A data generator creates qualitative test data considering various the real life data glitches entered through various means like human data entry, voice dictation and data scanning. ... -
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methylQA
methylation sequence data quality assessment tool
methylation sequence data quality assessment tool -
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FreeBioreactorController
Controls Bioreactors and Logs Data
An Android (later ported to iOS, WP7, HTML5 ) App that talks via Bluetooth to an Arduino Due monitoring pH/DO/Temperature and Viable Cell Density (optical or impedance), and impeller and valve control through standard Arduino Shield motor controllers and Relay boards. The system has 4 user levels: Engineer, Recipie Manager, Operator and Viewer. The intention is to make high quality software/hardware design complying with GAMP5 guidelines, and FDA CFR21. All software is GNU Public... -
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ANDS-funded QUT Projects
Creation of a metadata store & high quality research data descriptions
Numerous Australian institutions are contributing data descriptions to the Australian National Data Services' discovery portal, Research Data Australia (RDA). Records of varying levels of quality and richness have been created. There are currently no designated exemplars of good practice, or guidelines for the economical production of high quality and information rich data descriptions. -
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jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
