CoDeCZ

CoDeCZ derives copy number state from targeted sequencing data on gene or exon level.
Results are NOT true copy number however, but they are semi-quantitative:
It uses the modified z-score to calculate deviation in normalized coverage per specified region. The higher the Z-score,
the higher the copy number. The final z-score depends on the quality of the data and the makeup of the reference pool.

Project Samples

plots per gene, Her2 amplification in 2 samples

Rainbowplot of z-scores on exon level for 2000 genes spread across the genome

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Additional Project Details

Operating Systems

BSD, Linux

Programming Language

Unix Shell

Related Categories

Unix Shell Bio-Informatics Software

Registered

2014-01-08

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