CHANCE-HT is a ChIP-seq pre-processing software that filters samples with weak IP-strength, identifies heavily biased control experiments and under sequenced samples, detects batch effects, and normalizes large ensembles of ChIP-seq datasets. CHANCE-HT uses a parallel processing approach to normalize and filter large collections of ChIP-seq datasets in tandem.

Features

  • Multi-sample normalization
  • IP-strength estimation
  • Quality control
  • Bias detection
  • Batch effect detection
  • Parallel processing of large ensembles of datasets

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Registered

2014-05-20
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