DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
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GNU General Public License version 2.0 (GPLv2)Follow dnaa
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Easy install, well documented, works as advertised & quite fast. 5/5 stars!