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Showing 30 open source projects for "et"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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MyQ Print Management SoftwareBoost your digital or traditional workplace with MyQ’s secure print and scan solutions that respect your time and help you focus on what you do best.
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gramm
Gramm is a complete data visualization toolbox for Matlab
...A similar library called Seaborn also exists for Python. Gramm has been used in many publications from varied fields and is particularily suited for neuroscience, from human movement psychophysics (Morel et al. 2017), to electrophysiology (Morel et al. 2016; Ferrea et al. 2017), human functional imaging (Wan et al. 2017) and animal training (Berger et al. 2017). -
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Apache HBase
Get random, realtime read/write access to your Big Data
...Apache HBase is an open-source, distributed, versioned, non-relational database modeled after Google's Bigtable. A Distributed Storage System for Structured Data by Chang et al. Just as Bigtable leverages the distributed data storage provided by the Google File System, Apache HBase provides Bigtable-like capabilities on top of Hadoop and HDFS. Thrift gateway and a REST-ful Web service that supports XML, Protobuf, and binary data encoding options. Support for exporting metrics via the Hadoop metrics subsystem to files or Ganglia; or via JMX. ... -
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ConformalPrediction.jl
Predictive Uncertainty Quantification through Conformal Prediction
ConformalPrediction.jl is a package for Predictive Uncertainty Quantification (UQ) through Conformal Prediction (CP) in Julia. It is designed to work with supervised models trained in MLJ (Blaom et al. 2020). Conformal Prediction is easy-to-understand, easy-to-use and model-agnostic and it works under minimal distributional assumptions. Intuitively, CP works under the premise of turning heuristic notions of uncertainty into rigorous uncertainty estimates through repeated sampling or the use of dedicated calibration data. -
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Common Core Ontologies
The Common Core Ontology Repository
...CCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them, by defining a small number of classes and relations. CCO then extends from BFO in the sense that every class in CCO is asserted to be a subclass of some class in BFO, and that CCO adopts the generic relations defined in BFO (e.g., has_part) (Smith and Grenon, 2004). ... -
Full-stack observability with actually useful AI | Grafana CloudBuilt on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https://sourceforge.net/p/healpix/wiki/Exchanging%20Data%20with%20HEALPix/ GDL and FL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/ -
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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123VCF
An Intuitive and Efficient Tool for VCF file filtration
...It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran -
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ClimateTools.jl
Climate science package for Julia
Climate analysis tools in Julia. ClimateTools.jl is a collection of commonly-used tools in Climate science. Basics of climate field analysis are covered, with some forays into exploratory techniques associated with climate scenario design. The package is aimed to ease the typical steps of analysis of climate models outputs and gridded datasets (support for weather stations is a work-in-progress). Climate indices and bias correction functions are coded to leverage the use of multiple threads.... -
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rayshade-mathematica
rayshade and POV for Mathematica Export + view
Beautifully Render* your Graphic3D and Shown or Manipulate right in the Front End (without Export to, ie 3DStudio Art Renderer, et al). For use with Mathematica 4.0 - 13.1. Makes file.ray or .pov that will look much like image in notebook except rendered. Works easily/automatically with many Graphics3D (and some Graphic) as well. However graphics in 13.1 is too big to comment on: many will work many not. Has many options to fix renders that aren't so auto. -
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create). -
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NOVA
Analysis and visualization of complexome profiling data.
...Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441 -
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. -
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isiKnock
In silico knockouts for signaling pathways
...The perturbation of biological systems can reveal the complicated interplay and dependencies of pathway components. isiKnock is a software to automatically conduct and visualize in silico knockouts for signaling pathways (Hannig et al. 2019). isiKnock predicts the knockout behavior based on the calculation of signal flows at steady state. For an explanation of the concept of in silico knockouts, we refer to Scheidel et al. 2016 and Amstein et al. 2017. Hannig et al. (2019) isiKnock: in silico knockouts in signaling pathways, Bioinformatics, 35(5), 892–894 Amstein et al. (2017) Manatee invariants reveal functional pathways in signaling networks. ... -
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Coastline Evolution Model
Modified version of the Coastline Evolution Model (CEM)
The Coastline Evolution Model (CEM), originally developed by Ashton et al. (2001), Ashton and Murray (2006) and Valvo et al. (2006), is a reduced complexity, one-line sediment transport model that simulates the evolution of coastlines via wave-driven alongshore sediment transport. The original CEM has no Graphical User Interface (GUI) and does not provide graphical visualisations during model runs. -
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CVDdb
Cerebrovascular Disease database
...The data itself is for internal access only during project development. Development is by the BRAINS imagebank team : (http://www.brainsimagebank.ac.uk/, Job et al., 2016) Job et al., 2016. A brain imaging repository of normal structural MRI across the life course: Brain Images of Normal Subjects (BRAINS). http://dx.doi.org/10.1016/j.neuroimage.2016.01.027 Das et al, 2011. LORIS: a web-based data management system for multi-center studies. Frontiers in Neuroinformatics (5:37). -
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iCubing
Several OLAP algorithms, data structures and HPC OLAP versions
...There are also several cube types, i.e. alphanumeric cubes, text cubes with unstructured data and geo cube with geo types, dimensions, measures and hierarchies, so the OLAP area continues a hard challenge after more than 20 years of the seminal paper of Jim Gray et al. in 1997. Our team has more than 15 years of experience in developing OLAP kernels. -
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN allows for the identification of Boolean functions in the model from a given set of candidate Boolean rules which can be applied for network inference study. ... -
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PerformNet
Queue network modelization tool
Ceci est le projet réalisé à la session d’hiver 2014 par l’équipe Expresso. L’équipe était composée de : Philippe Olivier, François Lemonnier-Lalonde, Dominique Tremblay et François Moreau. Le projet a été réalisé pour le cours de Génie logiciel orienté objet, donné par M. Jonathan Gaudreault à l'Université Laval. Le projet consistait à développer un logiciel de modélisation de réseau de files d’attente, aussi appelé un réseau de Jackson. Chaque nœud du réspeau représente une station de traitement et chaque arc orienté représente un chemin possible d’une station à une autre. ... -
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Nuclei
Feature rich GUI for nuclear decay schemes
...A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. Nagl, et al., NIM A 726 (2013), 17-30 [doi:10.1016/j.nima.2013.05.045] ------------------------- © 2012-2013, Matthias Nagl, II. Physikalisches Institut, Georg-August-Universität Göttingen http://physik2.uni-goettingen.de/research/2_hofs ------------------------- -
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L\'application Web de la ligne du temps (timeline) permet à l\'utilisateur de consulter, de créer et de partager des lignes du temps et des scénarios d\'apprentissage, qui sont représentées graphiquement avec une échelle temporelle. Flex 2 et Ruby.
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PIVOT
PIVOT is a simple yet flexible visualization data tool
PIVOT is a simple yet flexible visualization tool based on Circos (Krzywinski et al., 2009), which offers a fast and aesthetical visualization of data and information. The Protein Interaction Visualization and Observation Tool (PIVOT) was developed specifically for the visualization of protein interaction. It is difficult to spot the proteins that have an interaction when given a large list of proteins but with PIVOT, it is easy to identify the them at a glance. -
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GestURC
Logiciel en ligne de gestion d'essais cliniques.
**** IMPORTANT **** Pour prendre connaissance du contenu des mises à jour consultez le ReadMe.txt ********************* Ce logiciel permet, via une interface simplifiée : - la gestion d'un portefeuille de projets de recherches cliniques/d'essais cliniques - la gestion du personnel associé (contrats, affectations, quotité) - le dépôt et le partage de documents par protocole de recherche - une gestion budgétaire simplifiée et partagée - l'accès à une interface d'administration des comptes d'accès et du paramétrage du logiciel L'interêt de ce logiciel repose sur sa simplicité d'installation et d'utilisation. Idéal pour les structures avec peu de personnel. Le nom de l'application vient de Gestion d'Unite de Recherche Clinique. ... -
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WxGeometrie
Le couteau-suisse du prof de maths
Calculatrice graphique en français, destinée aux professeurs ou aux étudiants du collège et du lycée. Elle permet de faire du calcul formel, de tracer des courbes et des figures géométriques exportables en png, eps ou svg. Linux, Windows... Cette version n'est plus maintenue. Nous vous recommandons d'utiliser désormais la nouvelle version, nommée Géophar : http://sourceforge.net/projects/geophar -
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We present an improved ball and stick representation called HyperBalls. This type of depiction is particularly useful to represent dynamic phenomena, such as the evolution of non covalent bonds and takes advantage of GPU capabilities. HyperBalls are now fully integrated into the UnityMol software and are actively developed in that context. You will find the most up-to-date versions of the shaders in the http://unitymol.sourceforge.net project.
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PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.
