PINCIS

PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create).

Features

PICS data analysis
Cleavage window determination

Project Samples

Project Activity

See All Activity >

License

Other License

Follow PINCIS

PINCIS Web Site

Other Useful Business Software

$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.

Start Free Trial

Rate This Project

User Reviews

Be the first to post a review of PINCIS!

Additional Project Details

Intended Audience

Other Audience

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software, Perl Command Line Tools, Perl Data Analytics Tool

Registered

2020-09-09

Similar Business Software

Highcharts

Highcharts is a JavaScript charting library that allows developers to create interactive and visually appealing charts for web applications. It offers a wide range of chart types, including line charts, bar charts, pie charts, scatter plots, and more. It also supports different types of data,...

See Software
Apify

Apify is a full-stack web scraping and automation platform helping anyone get value from the web. At its core is Apify Store, a marketplace with over 10,000 Actors where developers build, publish, and monetize automation tools. Actors are serverless cloud programs that extract data, automate...

See Software
DbVisualizer

DbVisualizer is a universal database client for anyone who works with data, from solo developers and startups to professional teams managing complex environments, including developers, DBAs, analysts, and data engineers working with relational and NoSQL databases. It offers a graphical interface...

See Software
SurveyJS

SurveyJS is an embeddable, self-hosted, white-label form builder for teams building custom forms, surveys, questionnaires, and other data collection tools inside web applications. It runs entirely on the client and is fully compatible with all modern JavaScript frameworks, including React,...

See Software
Nutrient SDK

Nutrient is the comprehensive solution for all your PDF needs, offering tools that effortlessly integrate and operate PDF functionality across any platform. 1. SDK PRODUCTS Integrate robust PDF functionality into iOS, Android, Windows, web (JavaScript), or any cross-platform technology,...

See Software
GW Apps

GW Apps – Build Powerful Business Apps Without Code. GW Apps is a secure, cloud-based no-code platform that enables businesses to create custom applications and automate workflows without programming. Designed for both business and IT teams, GW Apps combines an intuitive drag-and-drop builder...

See Software