Excel VBA Script to convert VCF file with multiple entries to CSV file
This is an Excel based VBA script used to import bulk .VCF files that contain more than 1 Vcard and then convert them to a comma separated .CSV file or Excel xls file that can then be imported into Outlook, Google, or any other application that supports import of contacts using CSV files. This has been written to support VCF 2.0, 2.1, 3.0 and 4.0 formatted files including those with printable encoding (MIME) and has been tested with bulk VCF files from Backupify, Google Contacts (Gmail...
Excel Telefon Rehberini Cep Telefonuna Aktarma
Türkçe and English Version * Programın bulunduğu dizinde, rehberiniz.vcf olarak dosya oluşturmaktadır. * Oluşan rehberiniz.vcf dosyayı cep telefonunuza mail olarak gönderiniz. * Cep telefonundan gelen maili açıp, eklentileri seçip, Önizle deyin. (İlgili program seçimi çıkar ise Rehber i seçin) * Çıkan listeden Cihaz ı seçerek aktarımı tamamlayın. Eklenecek resim foto boyutları 200x200 olmalıdır. English; * In the directory where the program is found, the file is created as...
A desktop application for analyzing whole genome VCF files
he decreasing cost high-throughput technologies led to a number of sequencing projects consisting thousands of whole genomes. The paradigm shift from exome to whole genome brings a significant increase in the size of output files. Most of the existing tools which are developed to analyze exome files are not adequate for large VCF files produced by whole genome studies. In this work we present VCF-Explorer, a variant analysis software capable of handling large files. Efficient memory management...
csv(Comma-Separated Values) to vCard 2.1 converter
This software will help you to convert a .csv(Comma-Separated Values) files to .vcf(vCard 2.1) files. For example, you'll find it very helpful for transfering your contacts from old-types cell phones, wich can export it's phonebook to csv only, to newer ones or even smartphones, etc. The latest version from now on has the ability of language selection. The built in languages are: English, Ukrainian and Russian. Besides, users can even make own translations now and store them into languages.ini...
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of high throughput sequencing reads with several deployment alternatives for different kinds of users. The main functionality of NGSEP is the variants detector, which allows to make simultaneous discovery of SNVs, indels, and CNVs. We also provide a user interface for bowtie2, alignments sorting, merging of variants from different samples, functional annotation, filtering, format conversion, and several additional features. Note: The quick...
convert genome coordinates betweeen assemblies
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.
Cross-plattform java invoicing and accounting application
An open-source java accounting application that integrates OpenOffice, Apache Derby and HBCI/FinTS to create and manage invoices, credit memos, delivery notes, bills etc. Imports from kTimeTracker, Task Coach, VCF, Hibiscus, Moneyplex, Starmoney, exports to Winston, VCF, openTrans et. al.
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by...
Vcard File Splitter
This little Java Program splits a VCF file consisting of multiple vcarss into single files. This is particualry useful if you want to import a vcf into Microsoft Outlook. It ist a executable jar file, so starting it with java -jar vcfsplitter.jar or double clicking it in a gui should work fine. You can also specify evertyhing by command line as follows: java -jar vcfsplitter.jar <infile> <outdir> For the source click on the website link..
VCF vcard, XML xcard, VCF Viewer for single and multicard files.
vCardz_i is a Beta 0.0.9 complete release on 6/14/2018 supporting multilingual vcard languages. (see screen shot 3) vCardz_i: Read vCard vcf and xCard xml files. View information in vcf and xml card files in a clear format, including the Photos and Logos, and hear the audio. Print the address or send it to the clipboard. Handles files with one or many cards in a single file. A treeview feature displays the filenames or 'Last, First' names allowing navigation to any vcf or xml file...
A tool that enables users select and view contact details from a vCard
A tool that enables users select and view contact details from a vCard (.vcf) format. It also has search functionality and remembers your last viewed file.
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http...
a data mining platform for variant annotation and visualization.
DaMold a powerful, integrated, web-based, and user-friendly tool to filter, annotate, cross-link, and visualize NGS, Sanger, and hotspot variants. It is easy-to-use software, which provides flexible input options and accepts variants in VCF and BED formats. For each variant DaMold predicts the variant effect, such as codon change, and amino acid change. Furthermore, it cross-links each variant with more than 30 clinically relevant public databases, which contain already reported SNPs and INDELs...
... provenant des smartphones (fichier .vcf) permettant ainsi la liaison entre le logiciel BaseProspect et les smartphones des commerçants de la société. De plus, il est possible de choisir les contacts à exporter et un système de mise à jour permet de consulter l’historique des modifications de contact. Enfin, le logiciel se présente sous forme d’une interface en ligne de commande qui permet d’accéder aux différentes fonctions proposées.
VCard to XLS is a utility that I created to convert a VCard file with multiple entries into Microsoft Excel format. Once in Excel, the file can be saved as a Comma Separated Values file (.CSV) and imported into may different programs.
MIP VARiant calling tool
... in the example input files (see sampleConfigExample.txt and runConfigExample.txt). Run command: java -Dsnappy.disable=true -Dlogging.config=/path-to-pipeline/MIPVAR-<version>-package/conf/logback.xml -cp "/path-to-pipeline/MIPVAR-<version>-package/lib/*" org.umcn.gen.mip.pipeline.RunMIPPipeline -sampleConfig /path-to-file/sampleConfig.txt -environment EMPTY -overridePipelineConfig /path-to-file/runConfig.txt Output: - Bam files per sample - VCF - Coverages per MIP per Sample
web based csv2vcf tool
convert csv2vcf csv2vcf,csv,vcf,android,addressbook,address,book http://dwaves.de/tools/csv2vcf/
Reference based genome assembly and annotation for new genome
This program can assemble and/or annotate genome for new genome and known genome upgrade using sequence alignment file (SAM or BAM format), sequence variant file (VCF format or five coloum table (tab-delimited, including chromosome, position, id, reference allele and alternative allele)) or new genome sequence file (FASTA format) based on reference genome sequence file (FASTA format) and annotation file (TBL, GTF, GFF, GFF3 or BED format).
REDO - RNA Editing Detection in Organelle
REDO is a comprehensive application tool for identifying RNA editing events in organelles based on variant call results (VCF files). It is a suite of Perl scripts and can work easily and directly in any operating system installed Perl and R Environment. The stringent rule depended filters and statistical filters are used in REDO for reducing false positive rate. It can provide detailed annotations, statistics and figures for RNA editing sites. REDO also can detect RNA editing events in multiple...
Outputs potential denovo variants from VCF given pedigree information.
Program takes variants calls and determines if the call is novel for a child compared to parents. Program can handle both annotated and unannotated VCF files, however output file is not compatible with GATK's snpEff, so you should annotate prior to using denovo_hit. Usage: ./denovo_hit <VCF file> <PED file> Output: ./potential_denovo.txt To compile: g++ -std=c++11 denovo_hit.cpp -o denovo_hit Please see files for example VCF file, and pedigree file. Format VCF file (tab delimited): CHROM...
Multiuser HylaFAX PHP/MySQL Web interface for viewing faxes online, downloading & emailing in PDF format, and categorizing & archiving all sent and received faxes.
VCFZip is a compression tool for VCF files.
VCFZip can compress a VCF file with higher compression ratio than gzip and BCF. It is designed to store full information in a VCF file with minimum disk space.
A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
Shows you all VCF files, that are inside chosen folder. You can view and read them, nothing more (at least now).