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vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics.
Features
- Converts VCF files to standardized MAF format
- Maps variants to a single gene isoform for consistency
- Integrates with Ensembl's Variant Effect Predictor (VEP)
- Allows customization of transcript annotations
- Supports annotation with custom ExAC VCFs
- Provides auxiliary scripts for format conversions
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MIT LicenseFollow vcf2maf
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