CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

Features

  • Genome coordinates conversion between assembiles
  • Support BAM, SAM, BigWig, Wiggle, BED, VCF input format
  • Run on Linux, Mac OS

Project Samples

crossmap Screenshot 1

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

Follow crossmap

crossmap Web Site

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Additional Project Details

Operating Systems

Linux, BSD, Mac

Intended Audience

Science/Research, Education, Engineering

Programming Language

Python, C

Related Categories

Python Bio-Informatics Software, C Bio-Informatics Software

Registered

2013-10-09
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