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crossmap

convert genome coordinates betweeen assemblies

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Description

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

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Features

  • Genome coordinates conversion between assembiles
  • Support BAM, SAM, BigWig, Wiggle, BED, VCF input format
  • Run on Linux, Mac OS

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Additional Project Details

Intended Audience

Science/Research, Education, Engineering

Programming Language

Python, C

Registered

2013-10-09

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