Search Results for "spectrometer"
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Showing 30 open source projects for "spectrometer"
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E-SGMN
Enhanced Structure-Guided Molecular Networking (E-SGMN)
In this study, an enhanced structure-guided molecular networking (E-SGMN) method was developed, which is specifically tailored for the Orbitrap Astral mass spectrometer (MS). Unlike previous network annotation methods, E-SGMN extracted both previously detected metabolites and those potentially detected by Astral from the metabolome database, enabling more efficient and accurate network construction through structural similarity. E-SGMN expands annotation coverage by accurately improving network size, while minimizing the inclusion of irrelevant compounds, achieving a balance between annotation scale and accuracy. -
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SeaBreeze
Open-source cross-platform spectrometer device driver
SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM). -
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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Eleana
Program for the analysis of spectroscopic data, in particular EPR(ESR)
Eleana is a program for manipulating, modifying and analyzing various spectroscopic data, in particular electron paramagnetic resonance spectra. It allows you to import data from Bruker spectrometers such as Elexsys or EMX and data from any ASCII file or imported from the clipboard. The program is under constant development, but already has many functions implemented for spectral analysis. Some of the basic functions include: baseline corrections, filtering, spectral clipping, integration /... -
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JBioFramework
Growing suite of proteomics simulations for educational purposes
JBioFramework (JBF) is a set of two different chemical separations simulations (2D Electrophoresis and Mass Spectrometry) that are frequently used in chemistry, biochemistry and proteomics research. It is written in the Java programming language and will run on any and all systems that have the JVM installed. As we continue to develop the software over the coming months/years and attempt to quantify the success of our efforts with testing and reviews, user input is very important. Please... -
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Ocean Optics Sample Pack
Sample code for Ocean Optics OmniDriver spectrometer device driver
Sample code demonstrating how to use OmniDriver to drive Ocean Optics full range of spectrometers from C, C++, C#, Java, LabVIEW, Delphi, MATLAB and more. -
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Linux python libraries for spectrometers
Linux python libraries to access usb spectrometers
...These libraries can be used to access the following spectromters: - C10082, C10083 and C11007MA (untested just now) from Hamamatsu - AvaSpec-ULS2048 (not working at the moment) - OceanOptics USB 4000 (not working at the moment) Please notify me which types work or what does not work! All libraries use the libusb library. PS: I still need to do some testing on the Hamamtsu library and please send me an OceanOptics or an Avantes Spectrometer so that I can reactivate the code. -
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MS-ML Studio
Free and Open-Source Tool for Mass Feature Extraction
Mass spectrometer is a useful tool for biochemistry research field analysis. It is used to identify microorganisms, protein, chemical compounds and complex diseases by blood analysis. There is many tools and libraries to handle different steps of mass spectrometry (MS) data analysis. However, the integration of all these tools lacks user friendly approaches. -
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gretina
GRETINA interfaces for NSCLDAQ
Supply glue that allows NSCLDAQ systems to be auxiliary detectors for the GRETINA Gamma ray spectrometer. Supplies code to extract a sample of data from GRETINA and build coincidences into coherent events from the GRETINA GEB. -
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IR-controller
STM-32 code for IR-spectrometer management
This is a project of IR-spectrometer controller. It based on STM32F103 chip with a lot of peripheral devices (1-wire thermometers, stepper motors, platinum thermistors and so on). In future I hope to add here schematics of full control system for this device. -
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spectrosand
Spectrometer for Aerosol Night Detection software suite
Spectrometer for Aerosol Night Detection software suite -
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FABS
Fluorescence and absorption spectroscopy made easy
...FABS was designed with students in mind, as a way to help high schoolers and undergraduates learn about spectroscopy without paying for expensive equipment and software. Accompanying this software is a hardware design, which can be used as a bare-bones spectrometer that will provide quantitative absorption and fluorescence emission spectra at an extremely low cost. It uses only materials that many people can find around their home. -
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pyCRYS
X-ray spectrometer designer
This program allows to design a x-ray spectrometer. A particular aspect is the large options of crystal shape. The source, crystal and detector are freely positionnable in 3D space (allowing to check the effect of misalignment) -
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ForLoveOfFamily
Gather data from and generate report for ASD LabSpec spectrometer
This program gathers the output of an ASD Labspec near-infrared spectrometer, calibrates an average sample, and then bins additional samples based on a sorting rulset. The user can control the fields being gathered, the rejection threshold, the number of samples in the calibration pool, the logic of how to sort bins. Batches are stored in a SQL database and output to a report text file. -
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spectrometer drivers and libraries for Linux. Driver and libraries for: I-MON 512E-USB spectrometer, I-MON E-USB 2.0 spectrometer
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Rthur converts mass spectrometry data in Thermo .RAW files to mzXML, an open data format supported by many proteomics applications and software pipelines. In contrast to other existing mzXML conversion utilities, Rthur uses Thermo Foundation 3.0 libraries and supports data produced by newer models of Thermo mass spectrometer. The program is specifically designed for use with Orbitrap Fusion data, and is also tested to be fully compatible with the LTQ Orbitrap and Q Exactive Plus.
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Nuclei
Feature rich GUI for nuclear decay schemes
Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. Nagl, et al., NIM A 726 (2013),... -
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Laser Control Utility
RS232 based Nd:YAG laser control and automation interface
...The Shutter modulation feature allows the user to use the TTL signal to open the laser shutter on demand, controlling the length of the laser pulsed as desired. This method yields reproducible full power laser pulses. The original motivation was to interface mass spectrometer data systems to diverse laser systems. Developed by: Jair Menegon, Paulo Moreira and Thiago Correra - University of São Paulo - Brazil. -
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ScSpectrometer
School spectrometer, spectrograph, scpectroscope
Spectrometer software for school use. Application reads from "web camera" as input spectrograph patteren. -
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GammaGrapher
Open Source Gamma Spectrometer aka MCA
This is a project started in the Geiger Counter Enthusiasts group and Gamma Spectrometry group on yahoo. Many individuals have contributed their time for this project. I will include their names in the README file. -
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sprayqc
LC-MS/MS monitoring
SprayQc is composed of multiple plug-in software components that use computer vision to analyze electrospray conditions, monitor the chromatographic device for stable backpressure, interact with a column oven to control pressure by temperature and ensure that the mass spectrometer is still acquiring data. Action is taken when a failure condition has been detected, such as stopping the column oven and the LC flow as well as automatically notifying the appropriate operator. Additionally, all defined metrics can be recorded synchronized on retention time with the MS acquisition file, allowing for later inspection and providing valuable information for optimization. ... -
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PCASP Calibrator
Software for processing PCASP calibration data
...This has all the same functionality, plus support for extra instruments. https://sourceforge.net/projects/opccalibrator/ PCASP Calibrator is software for processing calibration data from a PMS Passive Cavity Aerosol Spectrometer Probe with SPP-200 electronics. It provides a graphical user interface displaying plots of size distributions and sensitivity fits. Source code is included. This software includes data for common calibration materials, calculated using MieConScat (http://sourceforge.net/projects/mieconscat). This software can be used for generating data for other aerosol using Mie-Lorenz theory or the user can use their own software for another scattering theory. ... -
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BigRedBin is a web-based tool designed to pre-process metabolomics data generated by a mass spectrometer in an attempt to increase the signal-to-noise ratio. This is accomplished by using information from multiple technical replicates.
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mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
