Near-optimal RNA-Seq quantification
BBMap short read aligner, and other bioinformatic tools.
Molecular dynamics by NMR data analysis
The UEA sRNA Workbench
Comprehensive analysis of small RNA sequencing data
Splicing Prediction in Consensus Element
PCR primers / probes design from multiple & degenerate sequences
Short-read de novo assembler that identifies chimeric contigs.
R code/package for virus small RNA sequence data
cellPAINT allows users to create living illustrations of biology.
CusVarDB generated variant protein database from NGS-datasets
Check for selection of RNA secondary structure
miRPlant: An Integrated Tool for Identification of Plant miRNA
MiRDeep*
A toolbox for interpretation and visualization of RNA-seq GO analysis
si-Fi is a Software for RNAi (RNA interference) off-target prediction.
A CRISPR tool for user-defined protospacer adjacent motif
C++ header only library with AI and bioinformatics algorithms
Multi-way analysis of The Cancer Genome Atlas (TCGA) project datasets
RNA modification detection by RT signatures in deep sequencing data