Crosshub

Crosshub enables multi-way analysis of RNA-Seq, miRNA-Seq and methylome data of The Cancer Genome Atlas (TCGA) project:
1. differential expression analysis (genes, alternative transcripts and miRNA)
2. regulatory miRNA prediction (TargetScan, DIANA microT, mirSVR, PicTar, miRTarBase + co-expression)
3. regulatory TF prediction (ENCODE ChIP-Seq + co-expression)
4. methylation profiling analysis
5. RNA-Seq vs. clinical (TNM, stage, follow-up) correlation analysis

Generates Excel summaries.

For details, see the manual or article G.S. Krasnov et al. NAR 2016, Pubmed ID: 26773058