Comet open source tandem mass spectrometry (MS/MS) search engine.
RNA coding potential assessment tool
Extract and reformat a sequence database search or multiple alignment
A CLI tool for k-mer counting with all possible sizes of k at once
Quality Assessment Tool for Genome Assemblies
A tool to search post-translational modifications in a blind mode
Convert MSP files to MGF files - Only you know why
A program for associating taxonomic information in a phylogenetic tree
Simple peak list to MSP file converter
Fast ribosomal RNA detector and annotator
The fastest Smith-Waterman protein database search algorithm on GPUs
Get specific sequences from a FASTA or FASTQ file.
Parallel tool to search biclusters on binary datasets
Conversion of MGF files to JSON format
Multi-FASTA sequence (DNA or protein) statistics calculator.
Turku Event Extraction System
Exhaustive search for third order epistatic interactions using CUDA
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
Rapid Alignment Free Tool for Sequences Similarity Search
a mass spectrometry–based proteomics database search algorithm
Proteomics MS/MS database search engine
An interactive FTP-like command-line BaseSpace download client