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UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.
Features
- Counting k-mers with multiple k's value at once.
- Counting 1-mers to kmax specified by user.
- Counting large k-mers in practical time
- Support k limit up to any sizes
- Finding maximum length of repeat patterns
- Support DNA sequences, RNA sequences, and proteins sequences.
- Practical running time and memory usage
- Show spectrum of 1-mers to kmax-mers within seconds
- Dumping 1-mers to kmax-mers patterns within seconds
- Enable configuring minimum frequency for counting
- Separating singleton k-mers from repeats k-mers
Project Samples
Categories
Bio-InformaticsLicense
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