Comet open source tandem mass spectrometry (MS/MS) search engine.
Extract and reformat a sequence database search or multiple alignment
A CLI tool for k-mer counting with all possible sizes of k at once
A tool to search post-translational modifications in a blind mode
Convert MSP files to MGF files - Only you know why
Simple peak list to MSP file converter
Get specific sequences from a FASTA or FASTQ file.
Conversion of MGF files to JSON format
Exhaustive search for third order epistatic interactions using CUDA
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
Rapid Alignment Free Tool for Sequences Similarity Search
a mass spectrometry–based proteomics database search algorithm
Proteomics MS/MS database search engine
An interactive FTP-like command-line BaseSpace download client
PRADA : Pipeline for RNA-Sequencing Data Analysis
GUI to accelerate protein and nucleotide BLAST analysis
Taxonomic Unit Identification Tool
A pipeline for quantitative proteomics based upon isobaric tags
Find whether a KEGG module is complete in a proteome