MITP - conserve & novel miRNA identification & target prediction tool
RNA modification detection by RT signatures in deep sequencing data
DNA/RNA Sequence K-mer Toolkit
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
REDO - RNA Editing Detection in Organelle
Assessing mRNA integrity directly from RNA-Seq data
Tools for genomic analysis
a CRISPR guide RNA design and off-target searching to
OLego – short or long RNA-seq read mapping to discover exon junction
A novel approach to linking 16S rRNA amplicon profiles to metagenomes
Scalable and accurate targeted gene assembly for large-scale NGS data
Illinois Mayo Taxonomy Operations for RNA Database Operations
A hidden Markov model to predict clustered RNA motif sites
Reference-based transcriptome reconstruction software
C++ and Python code for simulating RNA virus replication
Bacterial Intergenic Region Analysis Pipeline
Translate smFRET trajectories into RNA secondary strucutures
Differential activE sub-Network (DEN): R/Bioconductor based package
PRADA : Pipeline for RNA-Sequencing Data Analysis
Crosslinking induced mutation site analysis
The Power Decoder simulator for the evaluation of pooled shRNA screen