BBMap short read aligner, and other bioinformatic tools.
The UEA sRNA Workbench
Hadoop spliced read aligner for RNA-seq data
miRPlant: An Integrated Tool for Identification of Plant miRNA
MiRDeep*
DNA/RNA Sequence K-mer Toolkit
Analyze time-course data with significance tests, clustering, modeling
A web-based Laboratory Information Management System
A sequence analysis tool for normal/tumor DNA and RNA data.
Meta data extractor based on ontologies