BBMap short read aligner, and other bioinformatic tools.
a single shiny solution from sequencer data to pathway analysis
Python package to analyze DNA methylation data
An intuitive and efficient tool for preprocessing Illumina FASTQ reads
Various scripts used in sequencing, annotation and RNAseq analysis
Somatic fusion-genes finder for RNA-seq data
City of Hope CpG Island Analysis Pipeline
A de novo local assembler for paired reads
A tool to construct haplotypes in diploid species
Alternative splicing and functional prediction analysis tool
Eukaryotic Genome Assembler
PERL script for split GBS reads by barcode.
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Genetic variants discovery tool
Design of specific primer combinations for bisulfite sequencing
Robust detection of somatic structural breakpoints in cancer genomes
Meta-analysis of Microarray Gene Expression Data
Hybrid Illumina/PacBio assembly of Plasmodium falciparum var genes
An Illumina clone assembly system using SOAPdenovo and ABySS
Placnet project