novoBreak

novoBreak is a tool used in cancer genomic studies to discover SV (both somatic and germline)
breakpoints. It can report accurate breakpoints of Deletions (DEL), Duplications (DUP), Inversions (INV) and
Translocations (TRA) (you should consider some of them are mobile elements insertions or templated
insertions). For novel insertions, we may only report the breakpoints but not the inserted
sequence. Please forget about novel insertions at the moment. We will work on that later. It
was designed for Illumina paired-end data.