123FASTQ

123FASTQ performs all the pre-processes of Illumina next-generation sequencing reads (FASTQ files) easier than ever.

Download the quick user manual for the latest version:
https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf

Authors:
Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nassirpour

Supervisors:
Javad Zahiri, PhD
University of California San Diego

Masoud Garshasbi, PhD
Tarbiat Modares University, Tehran, Iran

If you use 123FASTQ, please cite this preprint:
123FASTQ: an intuitive and efficient tool for preprocessing Illumina FASTQ reads
https://www.biorxiv.org/content/10.1101/2024.03.08.584032v1

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Take care of the details and ensure you use the latest version.
We hope this helps...

Features

Next generation sequencing reads quality check
Quality check of paired-end reads
Flexible trimmer
Trim recommendations based on quality check results
Adapter decontamination by two approaches
Fast5 to FASTQ conversion
SAM/BAM to FASTQ conversion
Cross platform (unix, windows)
Written in java

Project Samples

Project Activity

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License

MIT License

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123FASTQ Web Site

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Additional Project Details

Operating Systems

Linux, Mac, Windows

Languages

English

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2019-08-19

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