misc genomics tools download

This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586
These include
* identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads
* prokaryotic sequence/genome annotation
* RNAseq analysis - normalisation and collation of multiple samples as a group
* RNAseq visualisation

All scripts are provided on a 'best efforts' basis, however due to various system changes I do not guarantee that all files are the version used in the analysis.
Also, please be aware that these were very much developed with expediency in mind - that is, the process was expected to be performed in its final form once; little care was given to optimising runtime or chaining scripts together, and sometimes external resources are accessed manually.

Features

Genome sequence error correction
Prokaryotic sequence annotation
RNAseq normalisation of multiple samples as a group
RNAseq sample series/time-course visualisation

Project Samples

RNAseq batch normalisation - graph showing constitutive tile selection

RNAseq visualisation in Artemis - CDS features

RNAseq visualisation in Artemis - sequence tiles

Project Activity

See All Activity >

License

Fair License

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Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2021-12-06

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