Download
GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.
It can be used for both DNA and RNA and it has been tested on Illumina data.
GapFiller can be used whenever a sequence is to be assembled starting from reads lying on its ends, provided a loose estimate of sequence length.
Features
- Supported input format: FASTQ (.gz, .bz2), FASTA (.gz, .bz2), SAM, BAM
- Highly customizable assembly parameters
- Possibility to specify different datasets for seeding and assembly
- Possibility to store layout information (read position and orientation within assembled contigs)
Categories
Bio-InformaticsFollow GapFiller
Other Useful Business Software
Gemini 3 and 200+ AI Models on One Platform
Build generative AI apps with Vertex AI. Switch between models without switching platforms.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of GapFiller!
