Search Results for "blast"
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Showing 154 open source projects for "blast"
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SKUDONET ADC, operates at the application layer, efficiently distributing network load and application load across multiple servers. This not only enhances the performance of your application but also ensures that your web servers can handle more traffic seamlessly.
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Desktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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Blast Rename Files
Tool merubah nama file secara masal.
Alat ini bisa anda gunakan untuk merubah nama file secara masal dalam sekali klik. Tool ini berjalan pada operation system Windows. -
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MDX
Markdown for the component era
MDX lets you use JSX in your markdown content. You can import components, such as interactive charts or alerts, and embed them within your content. This makes writing long-form content with components a blast. -
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Chaos Mesh
A Chaos Engineering Platform for Kubernetes
... multiple filtering rules that allow selecting injection targets based on labels, annotations, and so on. They are collectively called selectors. In addition, users can also set a namespace whitelist to greater control the "blast radius" of the experiment. -
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BADASS is a software with a user-friendly graphical interface applied to the search and analysis of bacteriocin diversity in whole-metagenome shotgun sequencing data. The search for bacteriocin sequences is performed with tools such as BLAST or DIAMOND using the BAGEL4 database as a reference. The putative bacteriocin sequences identified are used to determine the abundance and richness of the three classes described so far. Abundance is calculated by comparing the reads identified...
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Calmerry is beneficial for businesses of all sizes, particularly those in high-stress industries, organizations with remote teams, and HR departments seeking to improve employee well-being and productivity
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Seqs Extractor is a useful tool, and can reduce ambiguities in analyses which uses BLAST command ine, commonly in the next generation sequencing, Transcriptomics, Proteomics, etc and help extract BLASTed sequences and sequences that contains microsatellites. Seqs Extrator also turns the BLAST command line more friendly.
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MView
Extract and reformat a sequence database search or multiple alignment
...: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. Outputs: - HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated). Found a bug? Please open an issue on the MView issue tracker at https://github.com/desmid/mview/issues or send an email to biomview@gmail.com. -
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A fungal genome annotation pipeline (funnote) integrated by CAIQ (Chinese Academy of Inspection and Quarantine). ## prerequisites 1. skewer (https://github.com/relipmoc/skewer) 2. BLAST (https://blast.ncbi.nlm.nih.gov/) 3. DIAMOND (https://github.com/bbuchfink/diamond) 4. funannotate (https://github.com/nextgenusfs/funannotate) 5. InterProScan (https://github.com/ebi-pf-team/interproscan) 6. emapper (https://github.com/eggnogdb/eggnog-mapper)
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FindPlasmids
Find plasmids in microbial genome assembly files
FindPlasmids identifies known plasmids in genome assembly files by using the assembly file to query a local Blast+ database of plasmid sequences. The FindPlasmids package includes executables for Mac OS X, Linux and Windows. Detailed instructions for making the local plasmid database, searching it, and identifying the plasmids are included in the FindPlasmids package. -
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OligoYap Portable
Oligo design and bioinformatic analysis software.
OligoYap can be used to design classical PCR, SYBR Green, TaqMan, MGB, Molecular Beacons, Microarray and Real-Time PCR primers/probes and for bioinformatics analysis. It has the features of enzyme cut analysis, mutation analysis, DNA/protein match and BLAST. You can easily record laboratory materials/files, prepare PCR mix and many other laboratory operations. It works on windows8.1 and earlier operating systems, but has not been tried on windows10 and later. For better images, you can right... -
AlertBot monitors your website's full functionality around the clock so you can focus your time on more important things.
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Candy's Space Adventures
In this quest, you will have to explore galaxies with various nefs..
Hi everyone, In the year 2014-2024, I was working on: Candy's Space Adventures: The Messages from the Lillians. In this quest, it will be possible to travel from different solar system to another, from a galaxy to another. The goal will be to save all living planet, and maybe repairing planets like venus or mars. We are now at v72.95! Friendly, Xylvan, Xilvan Design. -
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Cylindrical Alignment App
Arranges alignments in a rotating cylinder
The Cylindrical Alignment App is the successor to Cylindrical BLAST Viewer. Similarly, it arranges search or other comparisons, against their "axis". Searches can be made by Basic Local Alignment Search Tool, ClustalW, or Gene Machine to name a few. This version does not require downloading or installing Java3D, and has more modern GUI features. -
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compiler manifest wrapper
compiler manifest wrapper - adds manifest to your exe's if applicable
this is a compiler wrapper made to wrap - borland c++ 5.5.1 (no longer available, *bc*) - DJGPP (gp.cmd,older gp.bat,*gp*) - mingw and mingw-w64 compilers (install-compilers.cmd, zap*, *gw2*) - mingw-w64 vityan compiler batch files for ubuntu natty and freebsd (*gwix*) are packaged with set just above. currently, you still have to specify exe or dll even there is no extension of linux binaries. it is not setup yet for .so files. I will need to do something for those. These are... -
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KimBlast
Blast+ the easy way
KimBlast GUI formats and indexes Fasta databases for Blast, performs Blast searches and analyzes results. Python 3.x version. For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/kimblast3/code/ci/default/tree/README.md -
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ASGARD
Metabolic reconstruction from DNA or protein sequences.
ASGARD is software for metabolic pathway reconstruction, but it can also generate other types of biological sequence annotation (EC and GO numbers, BLAST reports). This program is intended to be run in UNIX-like systems, and supports SGE or PBS. -
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VR Radio Helper
VR-Optimized ATC/Radio Plugin for X-Plane + FlyWithLua
VR Radio Helper is a FlyWithLua plugin for X-Plane 11. It allows changing the two main COM frequencies of any X-Plane airplane in Virtual Reality via convenient touch pad number buttons in a multi-crew environment. For many default airplanes, NAV, Transponder and Barometer can be changed as well. Flying VR multi-crew in X-Plane with ATC is a blast! Yet, the default X-Plane 11 VR knobs are horrible when trying to monitor/fly and dial in a new ATC frequency at the same time (takes up to 2 minutes... -
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GenSeed-HMM
Progressive assembly tool using DNA, protein or profile HMMs as seeds.
... The first seed is provided by the user, and can be a piece of DNA or protein sequence, or an HMM profile, for increased sensitivity. This program depends on BLAST+ or hmmsearch and a number of third-party support tools (EMBOSS' transeq and splitter, bowtie, 454's sfffile and sffinfo). Which tools will be mandatory depends on the kind of seed and assembler used. Assemblers currently supported include CAP3, Newbler, SOAPdenovo, Velvet, and Abyss. -
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blastdb_api
C language interface to NCBI BLAST databases
Implements a C language interface to access NCBI BLAST databases. Currently limited to version 4 and 32 bit databases. Provides a sample application for reading these databases and emitting them in various formats. Does not use any part of the NCBI toolkit or toolkit+. -
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parallelblast_plus
Database sliced Blast implementation
Updated versions of programs described in: Parallel BLAST on split databases" Bioinformatics 2003 Sep 22;19(14):1865-6. https://doi.org/10.1093/bioinformatics/btg250 but which now work with modern BLAST versions. -
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Bt_proteindatabase
Specific Bacillus thuringiensis protien Blast database
A specific protein database of insecticidal genes (Cry, Vip, Sip, Mtx-like, Bin-like and other protins) from the Bacillus thuringiensis toxin nomenclature. -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software... -
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seqdiva
SeqDivA:Sequence Diversity Analysis
Sequence Diversity Analysis - SeqDivA version 1.0 is a python-based tool with a friendly GUI designed for Linux and Mac OS. Utility: Run alignment algorithms (water, needle, and blast) to compare all-vs.-all protein, DNA, and RNA sequences. SeqDivA provides similarity, identity, and bit-score matrixes and dot plots to explore/illustrate the diversity (homology degree) of the sequences, enabling the delimitation of the twilight zone. Installation: - Download SeqDivA... -
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Neat
A lightweight and flexible Sass grid
Neat is a fluid grid framework with the aim of being easy enough to use out of the box and flexible enough to customize down the road. Neat also works great with Bourbon and Bitters, They are all lightweight and easy to work with so it’s a blast to try them out and see if they’re right for your next project. If you need multiple grids in a single project, you can do this by defining a new map stored within a variable of your choosing. This variable can then be passed directly into any of Neat's... -
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MetaErg
Metagenome Annotation Pipeline
MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub... -
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Light Bright in Python
The classic toy reinvented in free software!
... to the various fields of engineering. This project was made just for the occasion! I had a blast making it and I hope everyone enjoys this FOSS just as much. The simple design and well-commented code is a great example of turning an everyday object into a shareable program for others to enjoy. Requires Python 3.7 and Pygame 1.9.6. These are FREE: Python Download: https://www.python.org/downloads/ Python/Pygame install YouTube tutorial: https://www.youtube.com/watch?v=AdUZArA-kZw -
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