parallelblast_plus

Database sliced Blast implementation

Brought to you by: mathog

Downloads: 0 This Week

Last Update: 2021-01-26

Get an email when there's a new version of parallelblast_plus

Updated versions of programs described in:

Parallel BLAST on split databases" Bioinformatics
2003 Sep 22;19(14):1865-6.
https://doi.org/10.1093/bioinformatics/btg250

but which now work with modern BLAST versions.

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow parallelblast_plus

parallelblast_plus Web Site

Other Useful Business Software

$300 Free Credits for Your Google Cloud Projects Icon

$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.

Start Free Trial

Rate This Project

Login To Rate This Project

User Reviews

Be the first to post a review of parallelblast_plus!

Additional Project Details

Registered

2019-06-13

Report inappropriate content

$300 Free Credits for Your Google Cloud Projects

Start building on Google Cloud with $300 in free credits. No commitment, no credit card required until you're ready to scale.

Launch your next project with $300 in free Google Cloud credits—no strings attached. Test, build, and deploy without risk. Use your credits across the entire Google Cloud platform to find what works best for your needs. After your credits are used, continue with always-free tier services. Only pay when you're ready to scale. Sign up in minutes and start exploring.

Start Free Trial

Recommended Projects

Lep-MAP3
Lep-MAP3 is a novel and free software for linkage mapping. It can construct linkage maps on very large number of markers and individuals on single or multiple families. Especially, it supports whole genome sequencing data even with low sequencing depth. If you use Lep-MAP3, please cite P. Rastas. Lep-MAP3: Robust linkage mapping even for low-coverage whole genome sequencing data, Bioinformatics. 2017, 33(23):3726-3732. https://doi.org/10.1093/bioinformatics/btx494. Please note Lep-Anchor for anchoring genomes with Lep-MAP3 linkage maps http://sourceforge.net/projects/lep-anchor
scDAPA
Detection and visualization of dynamic alternative polyadenylation
Kinannote
Protein Kinase Identification and Classification
miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
De-MetaST-BLAST
Files included are the programs De-MetaST and De-MetaST-BLAST. Additional screencast tutorial videos are provided to describe how to install these programs as well as examples for executing both De-MetaST and De-MetaST-BLAST. ++++++++++++++++++++++++++++ De-MetaST = metagenome search tool -output: FASTA file of retrieved amplicons -tutorial video: install_De-MetaST.mp4 De-MetaST-BLAST = metagenome search tool + BLAST -output: (1)FASTA file of retrieved amplicons and (2)TXT file of predicted functions for each amplicon -tutorial videos: (1)install_local_BLAST.mp4 and (2)install_De-MetaST-BLAST.mp4 ++++++++++++++++++++++++++++ All files must first be uncompressed before use. Be sure to read the README.txt files! If you are having trouble downloading a particular file, another source for these files is located on the Google Code project page.