Search Results for "plasmid"
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Showing 8 open source projects for "plasmid"
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HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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Our computer monitoring software allows employees, field contractors, and freelancers to manually clock in when they begin working on an assignment. The application will take screenshots randomly or at set intervals, which allows employers to observe the work process. The application only tracks activity when the employee is clocked in. No spying, only transparency.
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FindPlasmids
Find plasmids in microbial genome assembly files
FindPlasmids identifies known plasmids in genome assembly files by using the assembly file to query a local Blast+ database of plasmid sequences. The FindPlasmids package includes executables for Mac OS X, Linux and Windows. Detailed instructions for making the local plasmid database, searching it, and identifying the plasmids are included in the FindPlasmids package. -
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ARES
Antibiotic Resistance Evolution Simulator
ARES (Antibiotic Resistance Evolution Simulator) is a membrane computing-based model, able to simulate complex biological landscapes. It uses a nested membrane-surroundings entitites scheme formatted in a XML file. The created scenarios emulate entities as: i) Resistance genes, able to detoxify antibiotics. These genes can be located in the plasmid, in conjugative elements or in the chromosome; ii) plasmids and conjugative elements transferring genes between bacterial cells; iii) bacterial... -
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GetX
An automated mutation cassette design tool for scarless genome editing
..., insertions, and point mutations. It also designs synonymous codon fragments required to manipulate essential target genes to enable survival of the strain during the genome editing procedure. GetX provides genbank and fasta format files for a mutation template plasmid, a mutation cassette, and a sequence around the mutation site to guide the user through the design of the materials required for the scarless bacterial genome editing method. -
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Placnet
Placnet project
Plasmid Constellation Network project. Placnet is a new tools for plasmid analysis in NGS projects. Placnet has been written in Perl. It's been optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools. Please cite... -
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plasmiddesigner
Software for drawing plasmid map
Plasmid designer (PlaNer) is a software developed to easily create plasmid maps and extract the figure of it. Features, that is 'genes' (i.e. sequences of interest) or 'sites' (e.g. restriction sites), can be added, removed or deleted at any time. For every Feature, a different colour can be determined for appropriate visualization. The list of the features can be saved at any time and an existing one can be loaded to continue configuring a previously saved plasmid map. PlaNer uses the easy... -
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A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.
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Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database.
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A peer-to-peer file replication (synchronization) engine written in Java. Managed via the web. Keywords: RMI, JSP, Sync, P2P.
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