Search Results for "plasmid"

FindPlasmids identifies known plasmids in genome assembly files by using the assembly file to query a local Blast+ database of plasmid sequences. The FindPlasmids package includes executables for Mac OS X, Linux and Windows. Detailed instructions for making the local plasmid database, searching it, and identifying the plasmids are included in the FindPlasmids package.

ARES (Antibiotic Resistance Evolution Simulator) is a membrane computing-based model, able to simulate complex biological landscapes. It uses a nested membrane-surroundings entitites scheme formatted in a XML file. The created scenarios emulate entities as: i) Resistance genes, able to detoxify antibiotics. These genes can be located in the plasmid, in conjugative elements or in the chromosome; ii) plasmids and conjugative elements transferring genes between bacterial cells; iii) bacterial...

Plasmid designer (PlaNer) is a software developed to easily create plasmid maps and extract the figure of it. Features, that is 'genes' (i.e. sequences of interest) or 'sites' (e.g. restriction sites), can be added, removed or deleted at any time. For every Feature, a different colour can be determined for appropriate visualization. The list of the features can be saved at any time and an existing one can be loaded to continue configuring a previously saved plasmid map. PlaNer uses the easy...

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.

Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database.

A peer-to-peer file replication (synchronization) engine written in Java. Managed via the web. Keywords: RMI, JSP, Sync, P2P.