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Showing 2 open source projects for "newbler"

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    GenSeed-HMM

    GenSeed-HMM

    Progressive assembly tool using DNA, protein or profile HMMs as seeds.

    ...This program depends on BLAST+ or hmmsearch and a number of third-party support tools (EMBOSS' transeq and splitter, bowtie, 454's sfffile and sffinfo). Which tools will be mandatory depends on the kind of seed and assembler used. Assemblers currently supported include CAP3, Newbler, SOAPdenovo, Velvet, and Abyss.
    Downloads: 4 This Week
    Last Update:
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  • 2
    Scripts for summarizing, analyzing and extracting data from assemblies (and mappings) performed using the newbler program from 454 Life Sciences. See also contig.wordpress.com. DISCLAIMER I am not affiliated in any way with 454 Life Sciences
    Downloads: 0 This Week
    Last Update:
    See Project
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