hiddenDomains: a modern HMM to identify ChIP-seq enrichment
A Package for Identification of Long Inverted Repeats in Genomes
Predict and score RNA secondary structures
RNA editing detection by NGS data
Complete annotation of small RNA datasets from NGS
Hadoop spliced read aligner for RNA-seq data
rMATS-Iso is a generalization of rMATS for complex splicing patterns.
A Snakemake-based handy parameter-free pipeline for RNA-Seq analysis
Check for selection of RNA secondary structure
RatTransc: a rat long noncoding RNA database
miRPlant: An Integrated Tool for Identification of Plant miRNA
A powerful method for nonlinear dependence of two continuous variables
ALDB: a domestic-animal long noncoding RNA database
A Web-based genome-wide Position Weight Matrix (PWM) Scanner
MiRDeep*
a A suite designed to study mRNAs, miRNAs and circRNAs
Differential gene expression from exon expression RNA-Seq
Primers Design Tool & primers Database for Small non-coding RNAs
An End-to-End Analysis Pipeline for BS-seq
Comprehensive evaluation of differential methylation analysis methods