PCR primers / probes design from multiple & degenerate sequences
Gemi can be downloaded from the site (https://sites.google.com/site/haithamsobhy/software).
Please, do not hesitate to contact Dr. Haitham Sobhy if you need help.
Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional...
C++ header only library with AI and bioinformatics algorithms
C++ header only library, small and fast; Naive Bayesian Classifier, Decision Tree Classifier (ID3), DNA/RNA nucleotide second structure predictor, timeseries management, timeseries prediction, generic Evolutionary Algorithm, generic Hill Climbing algorithm and others.
The Java class library, that contains classes for calculation of different mathematical relations between object and number sequences and sets: Kendall distance, Spearman distance, similarity measure, L1 distance and others.
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Introduction and proof-of-concept of integrating JMS with CORBA. Using Java, design patterns. It's a university practical work, we'll implement an infrastructure for a fictious company, RNA, which provides news through many different channels.