Search Results for "rna-seq"
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Showing 4 open source projects for "rna-seq"
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SnowyOwl
RNA-Seq based gene prediction pipeline for fungal genomes
SnowyOwl is a gene prediction pipeline that uses RNA-Seq data to train and provide hints for the generation of Hidden Markov Model (HMM)-based gene predictions, and to evaluate the resulting models. The pipeline has been validated and streamlined by comparing its predictions to manually curated gene models in three fungal genomes, and its results show substantial increases in sensitivity and selectivity over previous gene predictions. Sensitivity is gained by repeatedly running the HMM gene... -
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COV2HTML
A visualization and analysis tool of Bacterial NGS data for Biologists
... mapping coverage data (DNA-seq, RNA-seq, ChIP-seq and TSS) performed in different prokaryotic organisms (bacteria, viruses...) or different experimental conditions (mutant versus wild type strains or different growth states…) facilitating studies. -
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Webapp
A web interface to the SnowyOwl gene prediction pipeline
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RNA Framework: * Component-based programming. * PHP 5.1 Compatible framework * using XSLT as the templates system. * Works only with PostgreSQL (with postgresql 8 too). * works with MemCache to give you highest possible performance
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