A quality control analysis tool for high throughput sequencing data
Near-optimal RNA-Seq quantification
Community-curated list of software packages and data resources
RNA coding potential assessment tool
High-performance read alignment, quantification and mutation discovery
BBMap short read aligner, and other bioinformatic tools.
Feature selection and deep learning modeling for omic biomarker study
Molecular dynamics by NMR data analysis
Comprehensive analysis of small RNA sequencing data
A code primarily aimed at DNA and RNA coarse-grained simulations
MiRDeep*
Splicing Prediction in Consensus Element
PCR primers / probes design from multiple & degenerate sequences
The UEA sRNA Workbench
Fusion gene detection pipeline bundled into a Singularity container.
Short-read de novo assembler that identifies chimeric contigs.
Accurately and fast analyzing microRNAs transcriptome in plants
R code/package for virus small RNA sequence data
cellPAINT allows users to create living illustrations of biology.
Somatic fusion-genes finder for RNA-seq data
Identification of pathogenic microorganisms in diagnostic samples
City of Hope CpG Island Analysis Pipeline
A de novo local assembler for paired reads