NAMD

NAMD

Theoretical and Computational Biophysics Group
MEGA NAMD

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MEGA:

About

MEGA (Molecular Evolutionary Genetics Analysis) is a powerful and user-friendly software suite designed for analyzing DNA and protein sequence data from species and populations. It facilitates both automatic and manual sequence alignment, phylogenetic tree inference, and evolutionary hypothesis testing. MEGA supports a variety of statistical methods including maximum likelihood, Bayesian inference, and ordinary least squares, making it an essential tool for comparative sequence analysis and understanding molecular evolution. MEGA offers advanced features such as real-time caption generation to help explain the results and methods used in analysis and the maximum composite likelihood method for estimating evolutionary distances. The software is equipped with robust visual tools like the alignment/trace editor and tree explorer and supports multi-threading for efficient processing. MEGA can be run on multiple operating systems, including Windows, Linux, and macOS.
NAMD:

About

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores for the largest simulations. NAMD is built for researchers who need to simulate large molecular systems efficiently while preserving compatibility with widely used molecular modeling workflows. It uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, and it is file-compatible with AMBER, CHARMM, and X-PLOR. It is designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and other molecular systems where atomic interactions and time-dependent motion need to be studied in detail.
MEGA:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
NAMD:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
MEGA:

Audience

Biologists, geneticists, and researchers in need of a tool for conducting evolutionary analysis and sequence comparison​ processes
NAMD:

Audience

Biophysicists, biologists, and simulation researchers requiring a biomolecular simulation tool for desktops, clusters, GPUs, and supercomputers
MEGA:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
NAMD:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
MEGA:

API

Offers API Not Supported
NAMD:

API

Offers API Not Supported
MEGA:

Screenshots and Videos

NAMD:

Screenshots and Videos

MEGA:

Pricing

Free
Free Version Supported
Free Trial Not Supported
NAMD:

Pricing

Free
Free Version Supported
Free Trial Not Supported
MEGA:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
NAMD:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
MEGA:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
NAMD:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
MEGA:

Company Information

MEGA
United States
www.megasoftware.net
NAMD:

Company Information

Theoretical and Computational Biophysics Group
Founded: 2006
United States
www.ks.uiuc.edu/Research//namd/
MEGA:

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NAMD:
MEGA:

Categories

NAMD:

Categories

MEGA:

Integrations

No info available.
NAMD:

Integrations

No info available.
MEGA:
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Claim MEGA and update features and information
NAMD:
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Claim NAMD and update features and information