ESMC

ESMC

Biohub
NAMD

NAMD

Theoretical and Computational Biophysics Group
ESMC NAMD

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ESMC:

About

ESMC is the latest in the ESM family of protein language models, establishing a new frontier in representation learning for protein biology. Trained on billions of evolutionary sequences, it learns representations that reflect a mechanistic reduction of protein structure and function. The model is built on a transformer architecture, supports sequences as its core modality, and is trained on up to 6 billion proteins. ESMC is designed for protein science research, including structure prediction, function annotation, protein design, and understanding evolutionary relationships between proteins. It can generate novel proteins from partial sequence, structure, or functional constraints, helping researchers explore new possibilities in protein design and biological discovery. The Biohub Platform provides access to ESMC through the API and the ESM Python package, with quickstart resources for installing the package, creating an API key, connecting to the platform.
NAMD:

About

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores for the largest simulations. NAMD is built for researchers who need to simulate large molecular systems efficiently while preserving compatibility with widely used molecular modeling workflows. It uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, and it is file-compatible with AMBER, CHARMM, and X-PLOR. It is designed to support biomolecular simulations involving proteins, membranes, nucleic acids, solvents, ions, and other molecular systems where atomic interactions and time-dependent motion need to be studied in detail.
ESMC:

Platforms Supported

Windows Not Supported
Mac Not Supported
Linux Not Supported
Cloud Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
NAMD:

Platforms Supported

Windows Supported
Mac Supported
Linux Supported
Cloud Not Supported
On-Premises Not Supported
iPhone Not Supported
iPad Not Supported
Android Not Supported
Chromebook Not Supported
ESMC:

Audience

Protein science researchers who need transformer-based sequence representations for structure prediction, function annotation, mutation analysis, and protein design
NAMD:

Audience

Biophysicists, biologists, and simulation researchers requiring a biomolecular simulation tool for desktops, clusters, GPUs, and supercomputers
ESMC:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
NAMD:

Support

Phone Support Not Supported
24/7 Live Support Not Supported
Online Supported
ESMC:

API

Offers API Supported
NAMD:

API

Offers API Not Supported
ESMC:

Screenshots and Videos

NAMD:

Screenshots and Videos

ESMC:

Pricing

Free
Free Version Supported
Free Trial Not Supported
NAMD:

Pricing

Free
Free Version Supported
Free Trial Not Supported
ESMC:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
NAMD:

Reviews/Ratings

Overall 0.0 / 5
ease 0.0 / 5
features 0.0 / 5
design 0.0 / 5
support 0.0 / 5

This software hasn't been reviewed yet. Be the first to provide a review:

Review this Software
ESMC:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
NAMD:

Training

Documentation Supported
Webinars Not Supported
Live Online Not Supported
In Person Not Supported
ESMC:

Company Information

Biohub
Founded: 2016
United States
biohub.ai/models/esmc
NAMD:

Company Information

Theoretical and Computational Biophysics Group
Founded: 2006
United States
www.ks.uiuc.edu/Research//namd/
ESMC:

Alternatives

NAMD:

Alternatives

ESMC:
Evo 2

Evo 2

Arc Institute
NAMD:
ESMC:
ESMFold2

ESMFold2

Biohub
NAMD:
ESMC:
NAMD:
Ascalaph Designer

Ascalaph Designer

Agile Molecule
ESMC:
HyperProtein

HyperProtein

Hypercube
NAMD:
ESMC:

Categories

AI Models Supported
AI Science Supported
NAMD:

Categories

ESMC:

Integrations

Biohub Supported
Python Supported
NAMD:

Integrations

Biohub Not Supported
Python Not Supported
ESMC:
Claim ESMC and update features and information
Claim ESMC and update features and information
NAMD:
Claim NAMD and update features and information
Claim NAMD and update features and information