SASHIMI

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Features

Database Search Engines (comet etc.)
SpecraST (Spectrum Library Search Engine)
Open-mass Search (Magnum etc.)
Kojak (Crosslinking Search)
DDA Analysis
DISCo (DIA Analysis)
reSpect (Chimeric Spectrum Analysis)
MS1 and MS2 Quantitation Labelled and Unlabelled
Decoy Database Generation
PeptideProphet (PSM Level Validation)
iProphet (Peptide Level Validation)
PTMProphet (Post-Translational Modification Validation)
Protein Level Validation
Spectrum Library Generation
Data Visualization Tools
Retention Time Cataloging and Prediction

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2), GNU Library or Lesser General Public License version 2.0 (LGPLv2)

Follow SASHIMI

SASHIMI Web Site

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Additional Project Details

Operating Systems

BSD, Linux, Mac, Windows

Languages

English

Intended Audience

Science/Research

User Interface

Command-line, Web-based

Programming Language

C, C++, Java, JavaScript, Perl, Python

Related Categories

Python Molecular Science Software, Python Chemistry Software, Python Bio-Informatics Software, Perl Molecular Science Software, Perl Chemistry Software, Perl Bio-Informatics Software, C++ Molecular Science Software, C++ Chemistry Software, C++ Bio-Informatics Software, C Molecular Science Software, C Chemistry Software, C Bio-Informatics Software, JavaScript Molecular Science Software, JavaScript Chemistry Software, JavaScript Bio-Informatics Software

Registered

2002-12-13

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