SASHIMI

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Features

Database Search Engines (comet etc.)
SpecraST (Spectrum Library Search Engine)
Open-mass Search (Magnum etc.)
Kojak (Crosslinking Search)
DDA Analysis
DISCo (DIA Analysis)
reSpect (Chimeric Spectrum Analysis)
MS1 and MS2 Quantitation Labelled and Unlabelled
Decoy Database Generation
PeptideProphet (PSM Level Validation)
iProphet (Peptide Level Validation)
PTMProphet (Post-Translational Modification Validation)
Protein Level Validation
Spectrum Library Generation
Data Visualization Tools
Retention Time Cataloging and Prediction

Project Samples

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2), GNU Library or Lesser General Public License version 2.0 (LGPLv2)

Follow SASHIMI

SASHIMI Web Site

Other Useful Business Software

Gemini 3 and 200+ AI Models on One Platform

Access Google's best plus Claude, Llama, and Gemma. Fine-tune and deploy from one console.

Build generative AI apps with Vertex AI. Switch between models without switching platforms.

Start Free

Additional Project Details

Operating Systems

BSD, Linux, Mac, Windows

Languages

English

Intended Audience

Science/Research

User Interface

Command-line, Web-based

Programming Language

C, C++, Java, JavaScript, Perl, Python

Related Categories

Python Molecular Science Software, Python Chemistry Software, Python Bio-Informatics Software, Perl Molecular Science Software, Perl Chemistry Software, Perl Bio-Informatics Software, C++ Molecular Science Software, C++ Chemistry Software, C++ Bio-Informatics Software, C Molecular Science Software, C Chemistry Software, C Bio-Informatics Software, JavaScript Molecular Science Software, JavaScript Chemistry Software, JavaScript Bio-Informatics Software

Registered

2002-12-13

Similar Business Software

SDS Manager

SDS Manager is a leading provider of Safety Data Sheet (SDS) management systems, offering one of the largest SDS databases with over 14 million documents available in 25 languages. With SDS Manager, employees can easily access Safety Data Sheets directly from their mobile devices by scanning...

See Software
QBench

The modern, flexible, easy-to-use LIMS. QBench enables our customers to get a LIMS up and running faster. Automate your entire lab with our developer-friendly API, Inventory Management, Customer Portal, Billing, and Quality Management System modules. QBench is a cloud-based Laboratory...

See Software
HSI Donesafe

HSI Donesafe is a no-code, cloud-based EHS software that simplifies safety, compliance, and risk management, transforming complex processes into user-friendly workflows. Trusted by industries worldwide, Donesafe allows organizations to track, manage, and report on essential EHS functions from...

See Software
Lockbox LIMS

A sample tracking, test result capture, and inventory management cloud LIMS for life science research, biotech/NGS, and industrial QC labs. Includes regulatory support for CLIA, HIPAA, Part 11, and ISO 17025. Nothing is more critical to a lab’s success than the quality, security, and...

See Software
RegDesk

With the ever-increasing complexity of global medical device registration regulations, more companies are turning to regulatory information management systems software (RIMS software) to streamline the application life cycle and manage medical device applications. RegDesk is the most...

See Software
SAP S/4HANA Cloud Public Edition

SAP Cloud ERP is the premier ERP solution for growth-focused organizations. Seamlessly integrating AI, and predictive analytics, it empowers businesses to digitally transform and streamline processes end to end. Leveraging built-in industry best practices, SAP Cloud ERP accelerates...

See Software