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From: <al...@us...> - 2009-10-06 04:37:37
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Revision: 2111
http://obi.svn.sourceforge.net/obi/?rev=2111&view=rev
Author: alanr
Date: 2009-10-06 04:37:27 +0000 (Tue, 06 Oct 2009)
Log Message:
-----------
don't import investigation-use-case.owl from obi.owl. Open obi-fucoidan.pprj to see obi+use case
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
trunk/src/ontology/branches/obi.owl
Added Paths:
-----------
trunk/src/ontology/branches/obi-fucoidan.owl
trunk/src/ontology/branches/obi-fucoidan.pprj
trunk/src/ontology/branches/obi-fucoidan.repository
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From: <yon...@us...> - 2009-10-05 22:25:38
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Revision: 2110
http://obi.svn.sourceforge.net/obi/?rev=2110&view=rev
Author: yongqunh
Date: 2009-10-05 22:25:28 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
JPG file of Dirk's use case draft.
--Oliver
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.jpg
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From: <yon...@us...> - 2009-10-05 21:15:01
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Revision: 2109
http://obi.svn.sourceforge.net/obi/?rev=2109&view=rev
Author: yongqunh
Date: 2009-10-05 21:14:50 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
Made some more changes.
--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.docx
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From: <yon...@us...> - 2009-10-05 21:07:06
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Revision: 2108
http://obi.svn.sourceforge.net/obi/?rev=2108&view=rev
Author: yongqunh
Date: 2009-10-05 21:06:51 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
meeting log
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/OBI_meeting_Log_Oct5.txt
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From: <yon...@us...> - 2009-10-05 21:06:33
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Revision: 2107
http://obi.svn.sourceforge.net/obi/?rev=2107&view=rev
Author: yongqunh
Date: 2009-10-05 21:06:26 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
The first draft of JBMS paper. --Oliver He
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.docx
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From: <yon...@us...> - 2009-10-05 20:38:16
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Revision: 2106
http://obi.svn.sourceforge.net/obi/?rev=2106&view=rev
Author: yongqunh
Date: 2009-10-05 20:37:56 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
some update.--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
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From: <yon...@us...> - 2009-10-05 18:20:30
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Revision: 2105
http://obi.svn.sourceforge.net/obi/?rev=2105&view=rev
Author: yongqunh
Date: 2009-10-05 18:20:14 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
A draft version of Dirk's use case.
--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
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From: <bjo...@us...> - 2009-10-05 18:00:10
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Revision: 2104
http://obi.svn.sourceforge.net/obi/?rev=2104&view=rev
Author: bjoernpeters
Date: 2009-10-05 17:59:58 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
cleaned up ONTIE classes
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <yon...@us...> - 2009-10-05 16:40:02
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Revision: 2103
http://obi.svn.sourceforge.net/obi/?rev=2103&view=rev
Author: yongqunh
Date: 2009-10-05 16:39:54 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
A folder for JBMS (SIG) paper. --Oliver He
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
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From: <bjo...@us...> - 2009-10-05 03:57:15
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Revision: 2102
http://obi.svn.sourceforge.net/obi/?rev=2102&view=rev
Author: bjoernpeters
Date: 2009-10-05 03:57:08 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
added more logical definition to PBS buffer. Specified hierarchy and reorganized conflicting test tube / collection tube / sample tube etc.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-05 01:10:36
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Revision: 2101
http://obi.svn.sourceforge.net/obi/?rev=2101&view=rev
Author: bjoernpeters
Date: 2009-10-05 01:10:28 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
Addressed comments from Larisa and Jennifer; merged in contributions from James. Added Jennifer's figure with updated labels. (this was all done in last revision).
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <bjo...@us...> - 2009-10-05 01:04:15
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Revision: 2100
http://obi.svn.sourceforge.net/obi/?rev=2100&view=rev
Author: bjoernpeters
Date: 2009-10-05 01:04:04 +0000 (Mon, 05 Oct 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Figures/FostelJ09_4943 schematic v01.ppt
trunk/docs/papers/release/Release-Manuscript-Master.doc
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/misc.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs.MYI
trunk/docs/papers/release/release.Data/Trash/Trash.Data/rdb/refs_ext.MYI
trunk/docs/papers/release/release.Data/rdb/csort.MYD
trunk/docs/papers/release/release.Data/rdb/csort.MYI
trunk/docs/papers/release/release.Data/rdb/misc.MYD
trunk/docs/papers/release/release.Data/rdb/misc.MYI
Removed Paths:
-------------
trunk/docs/papers/release/Release-Manuscript-Master-lss.doc
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From: <bjo...@us...> - 2009-10-04 23:44:36
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Revision: 2099
http://obi.svn.sourceforge.net/obi/?rev=2099&view=rev
Author: bjoernpeters
Date: 2009-10-04 23:44:30 +0000 (Sun, 04 Oct 2009)
Log Message:
-----------
modified epitope role to disposition, and updated affected relations
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-01 17:23:54
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Revision: 2098
http://obi.svn.sourceforge.net/obi/?rev=2098&view=rev
Author: alanr
Date: 2009-10-01 17:23:47 +0000 (Thu, 01 Oct 2009)
Log Message:
-----------
latest changes with helen. +hospital +member of hospital +drug role - certainty about fucoidan capsule individual size
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-10-01 17:22:39
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Revision: 2097
http://obi.svn.sourceforge.net/obi/?rev=2097&view=rev
Author: alanr
Date: 2009-10-01 17:22:31 +0000 (Thu, 01 Oct 2009)
Log Message:
-----------
latest changes with helen
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
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From: <bjo...@us...> - 2009-09-28 17:53:56
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Revision: 2096
http://obi.svn.sourceforge.net/obi/?rev=2096&view=rev
Author: bjoernpeters
Date: 2009-09-28 17:53:49 +0000 (Mon, 28 Sep 2009)
Log Message:
-----------
made ONTIE duplicates obsolete
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-09-28 17:13:18
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Revision: 2095
http://obi.svn.sourceforge.net/obi/?rev=2095&view=rev
Author: alanr
Date: 2009-09-28 17:13:12 +0000 (Mon, 28 Sep 2009)
Log Message:
-----------
fix couple of types
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-09-28 15:58:14
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Revision: 2094
http://obi.svn.sourceforge.net/obi/?rev=2094&view=rev
Author: alanr
Date: 2009-09-28 15:58:03 +0000 (Mon, 28 Sep 2009)
Log Message:
-----------
more notes. added treatment-portion-of-study-execution for better blinding representation
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-09-28 06:45:50
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Revision: 2093
http://obi.svn.sourceforge.net/obi/?rev=2093&view=rev
Author: alanr
Date: 2009-09-28 06:45:42 +0000 (Mon, 28 Sep 2009)
Log Message:
-----------
More there. The dosages and processes of administering them
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-09-27 08:58:12
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Revision: 2092
http://obi.svn.sourceforge.net/obi/?rev=2092&view=rev
Author: alanr
Date: 2009-09-27 08:58:05 +0000 (Sun, 27 Sep 2009)
Log Message:
-----------
s/some/only/ for realization of the placebo and treated roles for the study
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-09-27 08:47:44
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Revision: 2091
http://obi.svn.sourceforge.net/obi/?rev=2091&view=rev
Author: alanr
Date: 2009-09-27 08:47:29 +0000 (Sun, 27 Sep 2009)
Log Message:
-----------
starting to flesh out the control and treated groups and roles
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-09-27 07:58:18
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Revision: 2090
http://obi.svn.sourceforge.net/obi/?rev=2090&view=rev
Author: alanr
Date: 2009-09-27 07:58:11 +0000 (Sun, 27 Sep 2009)
Log Message:
-----------
Various informed consent stuff. blinding represented. fucoidan study execution classifies as single blind. Instances given orderly URIs for my sanity. lisp source is the master now. Various comments in there that still need to be addressed
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.owl
Added Paths:
-----------
trunk/src/ontology/branches/investigation-use-case.lisp
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From: <al...@us...> - 2009-09-27 07:37:03
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Revision: 2089
http://obi.svn.sourceforge.net/obi/?rev=2089&view=rev
Author: alanr
Date: 2009-09-27 07:36:50 +0000 (Sun, 27 Sep 2009)
Log Message:
-----------
move bits of investigation use case that slipped into obi.owl back where they belong. Add annotation property declaration for "replaced by"
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.owl
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-09-27 04:04:55
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Revision: 2088
http://obi.svn.sourceforge.net/obi/?rev=2088&view=rev
Author: alanr
Date: 2009-09-27 04:04:48 +0000 (Sun, 27 Sep 2009)
Log Message:
-----------
obi label source.
lets you write:
!'study design'@obi
and understands this as
!obo:OBI_0500000
See:
(defmethod make-uri-from-label-source ((source (eql :obi)) name actual)
Modified Paths:
--------------
trunk/src/tools/build/util.lisp
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From: <al...@us...> - 2009-09-25 21:26:36
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Revision: 2087
http://obi.svn.sourceforge.net/obi/?rev=2087&view=rev
Author: alanr
Date: 2009-09-25 21:26:28 +0000 (Fri, 25 Sep 2009)
Log Message:
-----------
but the xml base back. mc said it hurts p3.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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