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From: <al...@us...> - 2009-10-13 04:32:04
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Revision: 2161
http://obi.svn.sourceforge.net/obi/?rev=2161&view=rev
Author: alanr
Date: 2009-10-13 04:31:55 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
tie reagents to assay. some more editor notes. other cleaup
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <par...@us...> - 2009-10-13 04:02:55
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Revision: 2160
http://obi.svn.sourceforge.net/obi/?rev=2160&view=rev
Author: parkinso
Date: 2009-10-13 04:02:43 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
dt _unclassified terms moved to assert under dt and classify as model validation terms, defs added, curation complete
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-13 04:02:42
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Revision: 2159
http://obi.svn.sourceforge.net/obi/?rev=2159&view=rev
Author: bjoernpeters
Date: 2009-10-13 04:02:29 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Addressed comments / merged edits between 'Obi classes and relations' and beginning of discussion
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <al...@us...> - 2009-10-13 03:10:06
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Revision: 2158
http://obi.svn.sourceforge.net/obi/?rev=2158&view=rev
Author: alanr
Date: 2009-10-13 03:09:58 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
made it better
Modified Paths:
--------------
trunk/src/tools/protege/annotation-search-explore-tab.xml
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From: <al...@us...> - 2009-10-13 02:20:20
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Revision: 2157
http://obi.svn.sourceforge.net/obi/?rev=2157&view=rev
Author: alanr
Date: 2009-10-13 02:20:05 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
fix spelling
Added Paths:
-----------
trunk/src/tools/protege/annotation-search-explore-tab.xml
Removed Paths:
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trunk/src/tools/protege/annoatation-search-explore-tab.xml
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From: <al...@us...> - 2009-10-13 02:14:25
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Revision: 2156
http://obi.svn.sourceforge.net/obi/?rev=2156&view=rev
Author: alanr
Date: 2009-10-13 02:14:18 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
add tab for search/explore
Added Paths:
-----------
trunk/src/tools/protege/
trunk/src/tools/protege/annoatation-search-explore-tab.xml
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From: <al...@us...> - 2009-10-13 01:25:46
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Revision: 2155
http://obi.svn.sourceforge.net/obi/?rev=2155&view=rev
Author: alanr
Date: 2009-10-13 01:25:38 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
fix morph of editor note to datatypeproperty
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2009-10-13 01:12:21
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Revision: 2154
http://obi.svn.sourceforge.net/obi/?rev=2154&view=rev
Author: jzheng24
Date: 2009-10-13 01:12:14 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
modified according to today's SIG paper call
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS-terms.xls
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From: <al...@us...> - 2009-10-13 01:00:52
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Revision: 2153
http://obi.svn.sourceforge.net/obi/?rev=2153&view=rev
Author: alanr
Date: 2009-10-13 01:00:45 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
fix unsatisfiable class, and resultant inconsistency in last checkin
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <bjo...@us...> - 2009-10-13 00:15:03
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Revision: 2152
http://obi.svn.sourceforge.net/obi/?rev=2152&view=rev
Author: bjoernpeters
Date: 2009-10-13 00:14:48 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
changed effector and antigen presenting cell from role to function, and modified definitions accordingly.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-12 19:27:32
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Revision: 2151
http://obi.svn.sourceforge.net/obi/?rev=2151&view=rev
Author: alanr
Date: 2009-10-12 19:27:23 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
specified input of statistical test
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <mco...@us...> - 2009-10-12 18:55:09
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Revision: 2150
http://obi.svn.sourceforge.net/obi/?rev=2150&view=rev
Author: mcourtot
Date: 2009-10-12 18:55:00 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
removed duplicate labels
removed label for PATO_0001237 set at primary structure of RNA (PATO_0001237 is monadic quality)
Modified Paths:
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trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-12 18:24:26
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Revision: 2149
http://obi.svn.sourceforge.net/obi/?rev=2149&view=rev
Author: alanr
Date: 2009-10-12 18:24:19 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
same uri used for two entities. fixed
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <bjo...@us...> - 2009-10-12 17:44:35
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Revision: 2148
http://obi.svn.sourceforge.net/obi/?rev=2148&view=rev
Author: bjoernpeters
Date: 2009-10-12 17:44:27 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
Fixed the labels for cultures of effector cells and antigen presentation cells. Set the range+domain of obsolete relations to owl:Nothing, so that the reasoner will complain about their use.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
Property Changed:
----------------
trunk/src/ontology/branches/
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From: <al...@us...> - 2009-10-12 16:41:16
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Revision: 2147
http://obi.svn.sourceforge.net/obi/?rev=2147&view=rev
Author: alanr
Date: 2009-10-12 16:41:08 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
p-value value added. I think p-value should be scalar-measurement-datum
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-10-12 16:06:04
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Revision: 2146
http://obi.svn.sourceforge.net/obi/?rev=2146&view=rev
Author: alanr
Date: 2009-10-12 16:05:54 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
added statistical test, intepretation, hypothesis, conclusion, p-value and most glue
Modified Paths:
--------------
trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <lso...@us...> - 2009-10-12 15:58:51
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Revision: 2145
http://obi.svn.sourceforge.net/obi/?rev=2145&view=rev
Author: lsoldatova
Date: 2009-10-12 15:58:41 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
RS use case updated
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <fgi...@us...> - 2009-10-12 10:07:30
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Revision: 2144
http://obi.svn.sourceforge.net/obi/?rev=2144&view=rev
Author: fgibson_sf
Date: 2009-10-12 10:07:14 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
finished review of manuscript
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <jzh...@us...> - 2009-10-12 09:17:21
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Revision: 2143
http://obi.svn.sourceforge.net/obi/?rev=2143&view=rev
Author: jzheng24
Date: 2009-10-12 09:17:09 +0000 (Mon, 12 Oct 2009)
Log Message:
-----------
Terms used in JBMS paper, some terms need to be added to OBI.
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/JBMS-terms.xls
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From: <par...@us...> - 2009-10-11 23:28:40
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Revision: 2142
http://obi.svn.sourceforge.net/obi/?rev=2142&view=rev
Author: parkinso
Date: 2009-10-11 23:28:32 +0000 (Sun, 11 Oct 2009)
Log Message:
-----------
made multiple testing correction a defined class and added axions to existing child terms, and _unclassified terms asserted under data transformation.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-11 21:12:44
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Revision: 2141
http://obi.svn.sourceforge.net/obi/?rev=2141&view=rev
Author: alanr
Date: 2009-10-11 21:12:31 +0000 (Sun, 11 Oct 2009)
Log Message:
-----------
removed not template versions of obi-edit.pprj obi-edit.repository
Modified Paths:
--------------
trunk/src/ontology/branches/obi-edit.pprj.template
Removed Paths:
-------------
trunk/src/ontology/branches/obi-edit.pprj
trunk/src/ontology/branches/obi-edit.repository
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From: <sto...@us...> - 2009-10-10 14:18:20
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Revision: 2140
http://obi.svn.sourceforge.net/obi/?rev=2140&view=rev
Author: stoeckert
Date: 2009-10-10 14:17:25 +0000 (Sat, 10 Oct 2009)
Log Message:
-----------
CS edits
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <par...@us...> - 2009-10-10 04:58:01
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Revision: 2139
http://obi.svn.sourceforge.net/obi/?rev=2139&view=rev
Author: parkinso
Date: 2009-10-10 04:57:54 +0000 (Sat, 10 Oct 2009)
Log Message:
-----------
fixed logic on the neuroscience classes
Modified Paths:
--------------
trunk/src/ontology/branches/obi-edit.pprj
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-10 00:15:11
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Revision: 2138
http://obi.svn.sourceforge.net/obi/?rev=2138&view=rev
Author: bjoernpeters
Date: 2009-10-10 00:13:23 +0000 (Sat, 10 Oct 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-09 23:48:58
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Revision: 2137
http://obi.svn.sourceforge.net/obi/?rev=2137&view=rev
Author: bjoernpeters
Date: 2009-10-09 23:48:47 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
revised version of IEDB use case; added definitions, editor notes and better labels to instances
Modified Paths:
--------------
trunk/src/ontology/branches/IEDB-use-case.owl
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