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From: <bjo...@us...> - 2009-10-09 23:33:36
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Revision: 2136
http://obi.svn.sourceforge.net/obi/?rev=2136&view=rev
Author: bjoernpeters
Date: 2009-10-09 23:33:24 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
removed multi asserted superclasses for processes; added MHC multimer for assay; changed label for 'disease stage' and 'spontaneous process' to be in line with definition
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-09 22:12:54
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Revision: 2135
http://obi.svn.sourceforge.net/obi/?rev=2135&view=rev
Author: bjoernpeters
Date: 2009-10-09 22:12:44 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
fixed inconsistent 'environmental exposure to infectious agent'
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-09 21:30:53
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Revision: 2134
http://obi.svn.sourceforge.net/obi/?rev=2134&view=rev
Author: bjoernpeters
Date: 2009-10-09 21:30:41 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
several updates to infectious disease and related entities used in the IEDB export.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <par...@us...> - 2009-10-09 19:50:50
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Revision: 2133
http://obi.svn.sourceforge.net/obi/?rev=2133&view=rev
Author: parkinso
Date: 2009-10-09 19:50:38 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
Added new classes for neuroscience use case - changes detailed here http://docs.google.com/Doc?docid=0Aagyu8cVTs1OZGY2MjY5aHZfMTEyZzJocXFuYzM&hl=en#Neuroscience_use_case
Modified Paths:
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trunk/src/ontology/branches/obi-edit.owl
trunk/src/ontology/branches/obi.owl
Added Paths:
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trunk/src/ontology/branches/obi-edit.pprj
trunk/src/ontology/branches/obi-edit.repository
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From: <fgi...@us...> - 2009-10-09 16:25:18
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Revision: 2132
http://obi.svn.sourceforge.net/obi/?rev=2132&view=rev
Author: fgibson_sf
Date: 2009-10-09 16:25:06 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
got as far as the discussion on release/Release-Manuscript-Master.doc, then needed a break - review ongoing
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <par...@us...> - 2009-10-09 15:04:40
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Revision: 2131
http://obi.svn.sourceforge.net/obi/?rev=2131&view=rev
Author: parkinso
Date: 2009-10-09 15:04:31 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
JT version with use case edits, emailed 9 oct 09
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-10-09 04:16:20
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Revision: 2130
http://obi.svn.sourceforge.net/obi/?rev=2130&view=rev
Author: alanr
Date: 2009-10-09 04:16:14 +0000 (Fri, 09 Oct 2009)
Log Message:
-----------
fix uri for iao
Modified Paths:
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trunk/src/examples/development/concentration-demoed-vancouver-2009.owl
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From: <fgi...@us...> - 2009-10-08 16:21:02
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Revision: 2129
http://obi.svn.sourceforge.net/obi/?rev=2129&view=rev
Author: fgibson_sf
Date: 2009-10-08 16:20:51 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
some comments on the Release-Manuscript-Master.doc My Review is not completed and still ongoing
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <par...@us...> - 2009-10-08 15:00:31
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Revision: 2128
http://obi.svn.sourceforge.net/obi/?rev=2128&view=rev
Author: parkinso
Date: 2009-10-08 15:00:24 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
Added Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <al...@us...> - 2009-10-08 10:58:23
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Revision: 2127
http://obi.svn.sourceforge.net/obi/?rev=2127&view=rev
Author: alanr
Date: 2009-10-08 10:58:16 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
remove obi-edit.pprj in favor of template
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/obi-edit.owl
Removed Paths:
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trunk/src/ontology/branches/obi-edit.pprj
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From: <al...@us...> - 2009-10-08 10:57:19
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Revision: 2126
http://obi.svn.sourceforge.net/obi/?rev=2126&view=rev
Author: alanr
Date: 2009-10-08 10:57:06 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
templatify
Added Paths:
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trunk/src/ontology/branches/obi-edit.pprj.template
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From: <al...@us...> - 2009-10-08 10:41:45
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Revision: 2125
http://obi.svn.sourceforge.net/obi/?rev=2125&view=rev
Author: alanr
Date: 2009-10-08 10:41:35 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
nothing
Modified Paths:
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trunk/src/ontology/branches/obim.owl
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From: <al...@us...> - 2009-10-08 10:41:20
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Revision: 2124
http://obi.svn.sourceforge.net/obi/?rev=2124&view=rev
Author: alanr
Date: 2009-10-08 10:41:13 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
trying again
Added Paths:
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trunk/src/ontology/branches/obi-edit.repository.template
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From: <al...@us...> - 2009-10-08 10:40:26
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Revision: 2123
http://obi.svn.sourceforge.net/obi/?rev=2123&view=rev
Author: alanr
Date: 2009-10-08 10:40:17 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
trying again
Modified Paths:
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trunk/src/ontology/branches/obi-edit.owl
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-07 21:21:54
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Revision: 2122
http://obi.svn.sourceforge.net/obi/?rev=2122&view=rev
Author: mcourtot
Date: 2009-10-07 21:21:46 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
stupid protege - grml
Modified Paths:
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trunk/src/ontology/branches/obi-edit.owl
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From: <mco...@us...> - 2009-10-07 21:05:40
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Revision: 2121
http://obi.svn.sourceforge.net/obi/?rev=2121&view=rev
Author: mcourtot
Date: 2009-10-07 21:05:34 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
added files for local editing
Added Paths:
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trunk/src/ontology/branches/obi-edit.owl
trunk/src/ontology/branches/obi-edit.pprj
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From: <al...@us...> - 2009-10-07 16:34:18
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Revision: 2120
http://obi.svn.sourceforge.net/obi/?rev=2120&view=rev
Author: alanr
Date: 2009-10-07 16:34:11 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
fix curation status p4 lossage
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-07 12:50:21
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Revision: 2119
http://obi.svn.sourceforge.net/obi/?rev=2119&view=rev
Author: alanr
Date: 2009-10-07 12:50:14 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
added newly added ids for sodium citrate and antithrombin-III. Happy way to start the day\~
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-10-07 05:34:07
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Revision: 2118
http://obi.svn.sourceforge.net/obi/?rev=2118&view=rev
Author: alanr
Date: 2009-10-07 05:34:01 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
there are test tubes. they have citrate and edta in them. they have the blood specimens. this is too much work.
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-10-07 03:49:39
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Revision: 2117
http://obi.svn.sourceforge.net/obi/?rev=2117&view=rev
Author: alanr
Date: 2009-10-07 03:49:20 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
More on the AT-III assay. Antithrombin assay in the fucoidan study is unsatisfiable, so we are doing something interesting. Don't know why yet. Working towards data transformation now. Prize for finding reason for unsat class
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <bjo...@us...> - 2009-10-07 01:33:49
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Revision: 2116
http://obi.svn.sourceforge.net/obi/?rev=2116&view=rev
Author: bjoernpeters
Date: 2009-10-07 01:33:38 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
updated Figure 4 and legend for IEDB use case.
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <bjo...@us...> - 2009-10-07 00:55:06
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Revision: 2115
http://obi.svn.sourceforge.net/obi/?rev=2115&view=rev
Author: bjoernpeters
Date: 2009-10-07 00:54:54 +0000 (Wed, 07 Oct 2009)
Log Message:
-----------
added iedb use case files.
Added Paths:
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trunk/src/ontology/branches/IEDB-use-case.owl
trunk/src/ontology/branches/IEDB-use-case.pprj
trunk/src/ontology/branches/IEDB-use-case.repository
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From: <al...@us...> - 2009-10-06 19:26:13
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Revision: 2114
http://obi.svn.sourceforge.net/obi/?rev=2114&view=rev
Author: alanr
Date: 2009-10-06 19:24:56 +0000 (Tue, 06 Oct 2009)
Log Message:
-----------
more flesh on at-III assay. Some tentative defs for time stuff for iao. Yah, I know
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <al...@us...> - 2009-10-06 14:42:46
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Revision: 2113
http://obi.svn.sourceforge.net/obi/?rev=2113&view=rev
Author: alanr
Date: 2009-10-06 14:42:31 +0000 (Tue, 06 Oct 2009)
Log Message:
-----------
add some assays. can now search for 'Fucoidan-use-case' in p3 to find all elements of the use case
Modified Paths:
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trunk/src/ontology/branches/investigation-use-case.lisp
trunk/src/ontology/branches/investigation-use-case.owl
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From: <bjo...@us...> - 2009-10-06 05:52:11
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Revision: 2112
http://obi.svn.sourceforge.net/obi/?rev=2112&view=rev
Author: bjoernpeters
Date: 2009-10-06 05:51:58 +0000 (Tue, 06 Oct 2009)
Log Message:
-----------
removed use of obsolete 'disease course' class.
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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