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From: <yon...@us...> - 2009-10-14 13:53:22
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Revision: 2186
http://obi.svn.sourceforge.net/obi/?rev=2186&view=rev
Author: yongqunh
Date: 2009-10-14 13:53:16 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
More updates on Fig 1 and 2.
--Oliver
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.jpg
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <yon...@us...> - 2009-10-14 13:44:26
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Revision: 2185
http://obi.svn.sourceforge.net/obi/?rev=2185&view=rev
Author: yongqunh
Date: 2009-10-14 13:44:15 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Updated Fig 1 and 2.
--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <yon...@us...> - 2009-10-14 13:39:52
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Revision: 2184
http://obi.svn.sourceforge.net/obi/?rev=2184&view=rev
Author: yongqunh
Date: 2009-10-14 13:39:34 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Dirk use case image update.
--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.jpg
trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
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From: <lso...@us...> - 2009-10-14 12:32:54
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Revision: 2183
http://obi.svn.sourceforge.net/obi/?rev=2183&view=rev
Author: lsoldatova
Date: 2009-10-14 12:32:49 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
RS figure file added
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/Larissa_use_case_v4.png
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From: <lso...@us...> - 2009-10-14 12:30:53
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Revision: 2182
http://obi.svn.sourceforge.net/obi/?rev=2182&view=rev
Author: lsoldatova
Date: 2009-10-14 12:30:39 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
updates on larisa's use case
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <yon...@us...> - 2009-10-14 10:32:17
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Revision: 2181
http://obi.svn.sourceforge.net/obi/?rev=2181&view=rev
Author: yongqunh
Date: 2009-10-14 10:32:09 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
some update--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.vsd
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From: <bjo...@us...> - 2009-10-14 02:25:33
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Revision: 2180
http://obi.svn.sourceforge.net/obi/?rev=2180&view=rev
Author: bjoernpeters
Date: 2009-10-14 02:25:26 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Updated range of is_manufactured_by relation
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-14 02:14:12
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Revision: 2179
http://obi.svn.sourceforge.net/obi/?rev=2179&view=rev
Author: bjoernpeters
Date: 2009-10-14 02:14:05 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Obsoleted the obi 'homo sapiens' / person term, to be replaced by the NCBI one, and updated usage throughout the file.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <al...@us...> - 2009-10-14 01:02:57
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Revision: 2178
http://obi.svn.sourceforge.net/obi/?rev=2178&view=rev
Author: alanr
Date: 2009-10-14 01:02:51 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
add annotation property decls
Modified Paths:
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trunk/src/ontology/branches/externalDerived.owl
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From: <al...@us...> - 2009-10-14 00:32:49
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Revision: 2177
http://obi.svn.sourceforge.net/obi/?rev=2177&view=rev
Author: alanr
Date: 2009-10-14 00:32:32 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
use reasoner :none for curation-status-report, missing curation, extra-curation-status-instances
Modified Paths:
--------------
trunk/src/tools/build/qc-queries.lisp
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From: <jgr...@us...> - 2009-10-14 00:00:01
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Revision: 2176
http://obi.svn.sourceforge.net/obi/?rev=2176&view=rev
Author: jgreenbaum
Date: 2009-10-13 23:59:53 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
updated IEDB use case
Modified Paths:
--------------
trunk/src/ontology/branches/IEDB-use-case.owl
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From: <al...@us...> - 2009-10-13 22:57:34
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Revision: 2175
http://obi.svn.sourceforge.net/obi/?rev=2175&view=rev
Author: alanr
Date: 2009-10-13 22:57:27 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
s/obofoundry/obolibrary/
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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From: <mco...@us...> - 2009-10-13 22:50:30
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Revision: 2174
http://obi.svn.sourceforge.net/obi/?rev=2174&view=rev
Author: mcourtot
Date: 2009-10-13 22:50:21 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
added birn template
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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From: <bjo...@us...> - 2009-10-13 22:29:46
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Revision: 2173
http://obi.svn.sourceforge.net/obi/?rev=2173&view=rev
Author: bjoernpeters
Date: 2009-10-13 22:29:37 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Minor update, clarifying that the re-write Alan is tasked with is for the IAO section, not the role section.
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2009-10-13 22:24:30
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Revision: 2172
http://obi.svn.sourceforge.net/obi/?rev=2172&view=rev
Author: mcourtot
Date: 2009-10-13 22:24:18 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
added caudate nucleus and macaca fuscata for sig paper neuroscience use case
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2009-10-13 21:25:09
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Revision: 2171
http://obi.svn.sourceforge.net/obi/?rev=2171&view=rev
Author: mcourtot
Date: 2009-10-13 21:24:44 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Melanie's revision of results and use case sections
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <jzh...@us...> - 2009-10-13 18:12:48
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Revision: 2170
http://obi.svn.sourceforge.net/obi/?rev=2170&view=rev
Author: jzheng24
Date: 2009-10-13 18:12:35 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Add Jie's comments
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <jen...@us...> - 2009-10-13 17:11:56
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Revision: 2169
http://obi.svn.sourceforge.net/obi/?rev=2169&view=rev
Author: jenfostel
Date: 2009-10-13 17:11:49 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
added comments, a few changes to the text
changed parts of the text of use case #3 to reflect the current situation (no aspirin, AT# not PT time) we need to re-do this once the details and figure are settled.
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <yon...@us...> - 2009-10-13 13:46:27
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Revision: 2168
http://obi.svn.sourceforge.net/obi/?rev=2168&view=rev
Author: yongqunh
Date: 2009-10-13 13:46:17 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
A JPG version of my vaccine protection use case.
--Oliver He
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.jpg
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From: <yon...@us...> - 2009-10-13 13:44:34
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Revision: 2167
http://obi.svn.sourceforge.net/obi/?rev=2167&view=rev
Author: yongqunh
Date: 2009-10-13 13:44:26 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Some updates.
--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.vsd
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From: <jam...@us...> - 2009-10-13 13:31:29
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Revision: 2166
http://obi.svn.sourceforge.net/obi/?rev=2166&view=rev
Author: jamesmalone
Date: 2009-10-13 13:31:23 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
JM results read + review
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <yon...@us...> - 2009-10-13 11:47:48
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Revision: 2165
http://obi.svn.sourceforge.net/obi/?rev=2165&view=rev
Author: yongqunh
Date: 2009-10-13 11:47:41 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Oliver He's vaccine protection investigation use case picture in vsd format.
Added Paths:
-----------
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.vsd
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From: <jam...@us...> - 2009-10-13 11:03:40
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Revision: 2164
http://obi.svn.sourceforge.net/obi/?rev=2164&view=rev
Author: jamesmalone
Date: 2009-10-13 11:03:29 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
Additional GenePattern instance for data visualizations. Also some new data visualization classes and software instances corresponding to the DT visualization instances.
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2009-10-13 10:29:40
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Revision: 2163
http://obi.svn.sourceforge.net/obi/?rev=2163&view=rev
Author: jamesmalone
Date: 2009-10-13 10:29:31 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
grml^2
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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From: <jam...@us...> - 2009-10-13 10:29:18
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Revision: 2162
http://obi.svn.sourceforge.net/obi/?rev=2162&view=rev
Author: jamesmalone
Date: 2009-10-13 10:29:07 +0000 (Tue, 13 Oct 2009)
Log Message:
-----------
updated use case marking off the visualization classes I added in
Modified Paths:
--------------
trunk/docs/developer/DT/GenePatternUseCases.xls
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