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From: <jen...@us...> - 2009-10-15 23:33:32
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Revision: 2210
http://obi.svn.sourceforge.net/obi/?rev=2210&view=rev
Author: jenfostel
Date: 2009-10-15 23:03:43 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
Alan and i edited the clinical use case - see version labeled 15oct
Modified Paths:
--------------
trunk/docs/papers/release/Figures/Clinical usecase9-10b.ppt
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From: <par...@us...> - 2009-10-15 23:27:34
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Revision: 2209
http://obi.svn.sourceforge.net/obi/?rev=2209&view=rev
Author: parkinso
Date: 2009-10-15 22:21:43 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
neuro use case classes added and existing one completed
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <jen...@us...> - 2009-10-15 23:05:45
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Revision: 2211
http://obi.svn.sourceforge.net/obi/?rev=2211&view=rev
Author: jenfostel
Date: 2009-10-15 23:05:34 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
just in case it didn;t commit; updated clin usecase figure - see 15oct
Added Paths:
-----------
trunk/docs/papers/release/Figures/Clinical usecase-15oct.ppt
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From: <bjo...@us...> - 2009-10-15 16:34:31
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Revision: 2208
http://obi.svn.sourceforge.net/obi/?rev=2208&view=rev
Author: bjoernpeters
Date: 2009-10-15 16:34:25 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
changed instrument, device, platform, and ... recording device to be manufactured by some organization rather than some manufacturer
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <lso...@us...> - 2009-10-15 16:11:51
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Revision: 2207
http://obi.svn.sourceforge.net/obi/?rev=2207&view=rev
Author: lsoldatova
Date: 2009-10-15 16:11:35 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
updates on Larissa's use case
Modified Paths:
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trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
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From: <par...@us...> - 2009-10-15 05:05:49
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Revision: 2206
http://obi.svn.sourceforge.net/obi/?rev=2206&view=rev
Author: parkinso
Date: 2009-10-15 05:05:42 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
actioned https://sourceforge.net/tracker/index.php?func=detail&aid=2828871&group_id=177891&atid=886178
Modified Paths:
--------------
trunk/src/ontology/branches/obi-edit.owl
trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-15 04:45:49
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Revision: 2205
http://obi.svn.sourceforge.net/obi/?rev=2205&view=rev
Author: mcourtot
Date: 2009-10-15 04:45:41 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
post-debugging
Modified Paths:
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trunk/src/tools/build/external-templates.txt
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From: <al...@us...> - 2009-10-15 04:35:18
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Revision: 2204
http://obi.svn.sourceforge.net/obi/?rev=2204&view=rev
Author: alanr
Date: 2009-10-15 04:35:08 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
;; FIXME - Horrible workaround to compensate for abcl not understanding unicode and VO using smart quotes
(defparameter *smart-leftquote-pattern* (coerce (list #\. (code-char 196) (code-char 242)) 'string))
(defparameter *smart-rightquote-pattern* (coerce (list #\. (code-char 196) (code-char 244)) 'string))
(#"replaceAll" (#"replaceAll" (get-url endpoint :post `(("query" ,filled-query)) :persist nil :dont-cache t :force-refetch t) *smart-leftquote-pattern* "‘") *smart-rightquote-pattern* "’")
Modified Paths:
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trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2009-10-15 04:15:31
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Revision: 2203
http://obi.svn.sourceforge.net/obi/?rev=2203&view=rev
Author: alanr
Date: 2009-10-15 04:15:23 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
add encoding?
Modified Paths:
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trunk/src/ontology/branches/externalDerived-test.rdf
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From: <al...@us...> - 2009-10-15 04:12:27
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Revision: 2202
http://obi.svn.sourceforge.net/obi/?rev=2202&view=rev
Author: alanr
Date: 2009-10-15 04:12:18 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
testing
Added Paths:
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trunk/src/ontology/branches/externalDerived-test.rdf
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From: <mco...@us...> - 2009-10-15 04:07:29
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Revision: 2201
http://obi.svn.sourceforge.net/obi/?rev=2201&view=rev
Author: mcourtot
Date: 2009-10-15 04:07:22 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
added VO template query
Modified Paths:
--------------
trunk/src/tools/build/external-templates.txt
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From: <al...@us...> - 2009-10-15 02:34:36
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Revision: 2200
http://obi.svn.sourceforge.net/obi/?rev=2200&view=rev
Author: alanr
Date: 2009-10-15 02:34:19 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
guess not
Modified Paths:
--------------
trunk/src/tools/build/create-external-derived.lisp
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From: <al...@us...> - 2009-10-15 02:33:27
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Revision: 2199
http://obi.svn.sourceforge.net/obi/?rev=2199&view=rev
Author: alanr
Date: 2009-10-15 02:33:16 +0000 (Thu, 15 Oct 2009)
Log Message:
-----------
annotation properties. thought I checked in the fix before
Modified Paths:
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trunk/src/ontology/branches/externalDerived.owl
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From: <mco...@us...> - 2009-10-14 23:19:41
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Revision: 2198
http://obi.svn.sourceforge.net/obi/?rev=2198&view=rev
Author: mcourtot
Date: 2009-10-14 23:19:35 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
removed references to realizable information entity as per tracker item https://sourceforge.net/tracker/?func=detail&aid=2839101&group_id=177891&atid=886178
Note: I didn't update obsolete classes
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-14 23:10:38
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Revision: 2197
http://obi.svn.sourceforge.net/obi/?rev=2197&view=rev
Author: mcourtot
Date: 2009-10-14 23:10:26 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
repaired VO URIs - should have been purl.obolibrary.org/obo/VO_xxxxxxx instead of purl.obolibrary.org/VO_xxxxxxx (pattern matching: notice the missing obo?)
Modified Paths:
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trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi.owl
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From: <jzh...@us...> - 2009-10-14 22:35:27
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Revision: 2196
http://obi.svn.sourceforge.net/obi/?rev=2196&view=rev
Author: jzheng24
Date: 2009-10-14 22:35:20 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
add 'survival rate'
modify restrictions of 'survival assessment' and 'pathogen challenge'
move 'pathogen challenge' under 'administering substance in vivo'
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <sto...@us...> - 2009-10-14 21:00:05
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Revision: 2195
http://obi.svn.sourceforge.net/obi/?rev=2195&view=rev
Author: stoeckert
Date: 2009-10-14 20:59:05 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
CS review of Results and Use Cases
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2009-10-14 20:42:35
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Revision: 2194
http://obi.svn.sourceforge.net/obi/?rev=2194&view=rev
Author: mcourtot
Date: 2009-10-14 20:42:29 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
mireoted vaccine (VO_0000001) and vaccination (VO_0000002).
obsoleted corresponding OBI terms (OBI_0000745 and OBI_0000746)
updated restriction on vaccine to specified output of vaccine preparation instead of just specified output of manufacturing.
[octopus:~/Desktop/code/pellet-2.0.0-rc4] mcourtot% ./pellet.sh consistency ~/Desktop/OBI/SVN/obi/trunk/src/ontology/branches/obi.owl
Consistent: Yes
[octopus:~/Desktop/code/pellet-2.0.0-rc4] mcourtot% ./pellet.sh unsat ~/Desktop/OBI/SVN/obi/trunk/src/ontology/branches/obi.owl
Checking unsatisfiability 2936 elements
Checking unsatisfiability: 100% complete in 00:00:20
Checking unsatisfiability finished in 00:00:20
Modified Paths:
--------------
trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-14 19:21:30
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Revision: 2193
http://obi.svn.sourceforge.net/obi/?rev=2193&view=rev
Author: bjoernpeters
Date: 2009-10-14 19:21:22 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
modified label from extra cellular electrophysiology recording to extracellular ...
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-14 18:36:47
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Revision: 2192
http://obi.svn.sourceforge.net/obi/?rev=2192&view=rev
Author: bjoernpeters
Date: 2009-10-14 18:36:38 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
added 'purification objective'
Modified Paths:
--------------
trunk/src/ontology/branches/obi.owl
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From: <yon...@us...> - 2009-10-14 18:27:04
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Revision: 2191
http://obi.svn.sourceforge.net/obi/?rev=2191&view=rev
Author: yongqunh
Date: 2009-10-14 18:26:49 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Updated my vaccine protection use case figure.
--Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.jpg
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.vsd
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From: <yon...@us...> - 2009-10-14 18:22:39
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Revision: 2190
http://obi.svn.sourceforge.net/obi/?rev=2190&view=rev
Author: yongqunh
Date: 2009-10-14 18:22:30 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Update Fig 1 use case. --Oliver He
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS2009_OBI.doc
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.jpg
trunk/docs/papers/JBMS_2009/OliverHe_Vaccine_protection_usecase.vsd
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From: <jzh...@us...> - 2009-10-14 15:50:56
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Revision: 2189
http://obi.svn.sourceforge.net/obi/?rev=2189&view=rev
Author: jzheng24
Date: 2009-10-14 15:50:45 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
updated according to new version of vaccination use case diagram
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS-terms.xls
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From: <jzh...@us...> - 2009-10-14 15:48:07
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Revision: 2188
http://obi.svn.sourceforge.net/obi/?rev=2188&view=rev
Author: jzheng24
Date: 2009-10-14 15:48:01 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
Updated according to new version of Robot use case diagram
Modified Paths:
--------------
trunk/docs/papers/JBMS_2009/JBMS-terms.xls
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From: <p_r...@us...> - 2009-10-14 15:12:58
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Revision: 2187
http://obi.svn.sourceforge.net/obi/?rev=2187&view=rev
Author: p_rocca_serra
Date: 2009-10-14 15:12:47 +0000 (Wed, 14 Oct 2009)
Log Message:
-----------
ISA use case figure
Added Paths:
-----------
trunk/docs/papers/release/Figures/OBI-ISA-use-case.ppt
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