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From: <al...@us...> - 2009-10-19 20:57:53
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Revision: 2261
http://obi.svn.sourceforge.net/obi/?rev=2261&view=rev
Author: alanr
Date: 2009-10-19 20:57:46 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
resurrected
Added Paths:
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trunk/docs/papers/release/Release-Manuscript-Master-resurrected.doc
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From: <jzh...@us...> - 2009-10-19 20:48:43
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Revision: 2260
http://obi.svn.sourceforge.net/obi/?rev=2260&view=rev
Author: jzheng24
Date: 2009-10-19 20:48:30 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
add "has curation status" annotation to terms used in the manuscript
updated terms up to use case#3 figure (not cover terms used in the legend of use case#3 figure and text)
Modified Paths:
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trunk/docs/papers/release/OBITerm-ids.xls
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From: <jen...@us...> - 2009-10-19 20:25:20
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Revision: 2259
http://obi.svn.sourceforge.net/obi/?rev=2259&view=rev
Author: jenfostel
Date: 2009-10-19 20:25:13 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
re-adding original paper
Removed Paths:
-------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <jen...@us...> - 2009-10-19 20:23:24
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Revision: 2258
http://obi.svn.sourceforge.net/obi/?rev=2258&view=rev
Author: jenfostel
Date: 2009-10-19 20:23:11 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
re-wroked use case 3 in text
Added Paths:
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trunk/docs/papers/release/Release-Manuscript-MasteUC5r.doc
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From: <jam...@us...> - 2009-10-19 20:20:22
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Revision: 2257
http://obi.svn.sourceforge.net/obi/?rev=2257&view=rev
Author: jamesmalone
Date: 2009-10-19 20:20:08 +0000 (Mon, 19 Oct 2009)
Log Message:
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information processing obsolete
all DT unclassified now addressed - _unclassified removed from DT
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <jam...@us...> - 2009-10-19 20:03:10
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Revision: 2256
http://obi.svn.sourceforge.net/obi/?rev=2256&view=rev
Author: jamesmalone
Date: 2009-10-19 20:03:03 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
Clean up of some _unclassified in data transformation
Additional objectives and mass spec DT classes added
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-19 19:00:24
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Revision: 2255
http://obi.svn.sourceforge.net/obi/?rev=2255&view=rev
Author: bjoernpeters
Date: 2009-10-19 19:00:17 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
Added Paths:
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trunk/docs/papers/release/Figures/Figure 5.ppt
Removed Paths:
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trunk/docs/papers/release/Figures/Figure 4.ppt
trunk/docs/papers/release/Information Artifacts-2.docx
trunk/docs/papers/release/Release-Manuscript-Master-before-comment-removal.doc
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From: <bjo...@us...> - 2009-10-19 18:59:21
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Revision: 2254
http://obi.svn.sourceforge.net/obi/?rev=2254&view=rev
Author: bjoernpeters
Date: 2009-10-19 18:58:59 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
Added Paths:
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trunk/docs/papers/release/Figures/Figure 4.ppt
Removed Paths:
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trunk/docs/papers/release/Figures/Clinical usecase-15oct.ppt
trunk/docs/papers/release/Figures/Clinical usecase.ppt
trunk/docs/papers/release/Figures/Clinical usecase9-10b.ppt
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From: <bjo...@us...> - 2009-10-19 18:58:11
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Revision: 2253
http://obi.svn.sourceforge.net/obi/?rev=2253&view=rev
Author: bjoernpeters
Date: 2009-10-19 18:58:02 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
New Clinical Trial use case Figure
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2009-10-19 17:11:49
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Revision: 2252
http://obi.svn.sourceforge.net/obi/?rev=2252&view=rev
Author: mcourtot
Date: 2009-10-19 17:11:39 +0000 (Mon, 19 Oct 2009)
Log Message:
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Survival analysis: survival analysis is a data transformation that involves the modeling of time to event data; the purpose of survival analysis is to model the underlying distribution of event times and to assess the dependence of the event time on other explanatory variables
http://en.wikipedia.org/wiki/Survival_analysis
Kaplan meier: a nonparametric (actuarial) data transformation technique for estimating time-related events. It is a univariate analysis that estimates the probability of the proportion of subjects in remission at a particular time, starting from the initiation of active date (time zero), and takes into account those lost to follow-up or not yet in remission at end of study (censored), Objective: survival analysis
http://en.wikipedia.org/wiki/Kaplan%E2%80%93Meier_estimator
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-19 16:57:57
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Revision: 2251
http://obi.svn.sourceforge.net/obi/?rev=2251&view=rev
Author: mcourtot
Date: 2009-10-19 16:57:47 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
take out restriction to data set output on error correction DT and multiple testing correction
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-19 16:54:45
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Revision: 2250
http://obi.svn.sourceforge.net/obi/?rev=2250&view=rev
Author: mcourtot
Date: 2009-10-19 16:54:30 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
https://sourceforge.net/tracker/index.php?func=detail&aid=2881843&group_id=177891&atid=886178
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-19 16:48:29
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Revision: 2249
http://obi.svn.sourceforge.net/obi/?rev=2249&view=rev
Author: mcourtot
Date: 2009-10-19 16:48:20 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
- enrollement: restrictions should be put to organism
---- subclass human enrollment retsriction only homo sapiens
---- enrolled population role gets obsolete
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-19 16:33:57
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Revision: 2248
http://obi.svn.sourceforge.net/obi/?rev=2248&view=rev
Author: mcourtot
Date: 2009-10-19 16:33:50 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
mireoted use case terms
FMA_49184 material entity "mouth"
UO_0000002 mass unit parent measurement unit label
UO_0000021 gram parent mass unit (above)
GO_007596 blood coagulation, parent Process
CHEBI_32142 sodium citrate - parent molecular entity
CHEBI_42191 edta parent molecular entity
Modified Paths:
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trunk/src/ontology/branches/external.owl
trunk/src/ontology/branches/externalDerived.owl
trunk/src/ontology/branches/obi.owl
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From: <yon...@us...> - 2009-10-19 16:14:05
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Revision: 2247
http://obi.svn.sourceforge.net/obi/?rev=2247&view=rev
Author: yongqunh
Date: 2009-10-19 16:13:49 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
U[dated/--Oliver
Modified Paths:
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trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.jpg
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From: <mco...@us...> - 2009-10-19 16:13:36
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Revision: 2246
http://obi.svn.sourceforge.net/obi/?rev=2246&view=rev
Author: mcourtot
Date: 2009-10-19 16:13:29 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
mireoted human antithrombin III
Modified Paths:
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trunk/src/ontology/branches/external-byhand.owl
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From: <yon...@us...> - 2009-10-19 16:12:59
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Revision: 2245
http://obi.svn.sourceforge.net/obi/?rev=2245&view=rev
Author: yongqunh
Date: 2009-10-19 16:12:53 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
Updated.--Oliver
Modified Paths:
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trunk/docs/papers/JBMS_2009/Dirk_use_case_v1.vsd
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From: <al...@us...> - 2009-10-19 15:57:48
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Revision: 2244
http://obi.svn.sourceforge.net/obi/?rev=2244&view=rev
Author: alanr
Date: 2009-10-19 15:57:40 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
add fucoidan classes
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-19 15:04:57
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Revision: 2243
http://obi.svn.sourceforge.net/obi/?rev=2243&view=rev
Author: mcourtot
Date: 2009-10-19 15:04:48 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
updated definition and example of usage of measure functionas per https://sourceforge.net/tracker/?func=detail&atid=886178&aid=2845437&group_id=177891. Thanks Helen :)
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <mco...@us...> - 2009-10-19 14:54:13
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Revision: 2242
http://obi.svn.sourceforge.net/obi/?rev=2242&view=rev
Author: mcourtot
Date: 2009-10-19 14:54:06 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
repaired strange grml commit grml :)
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-19 14:14:45
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Revision: 2241
http://obi.svn.sourceforge.net/obi/?rev=2241&view=rev
Author: bjoernpeters
Date: 2009-10-19 14:14:38 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
Helen's edits in the discussion
Modified Paths:
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trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <jzh...@us...> - 2009-10-19 05:50:56
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Revision: 2240
http://obi.svn.sourceforge.net/obi/?rev=2240&view=rev
Author: jzheng24
Date: 2009-10-19 05:50:49 +0000 (Mon, 19 Oct 2009)
Log Message:
-----------
update OBI terms table according to Oct 18 cleanup workshop
Modified Paths:
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trunk/docs/papers/release/OBITerm-ids.xls
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From: <mco...@us...> - 2009-10-18 22:04:45
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Revision: 2239
http://obi.svn.sourceforge.net/obi/?rev=2239&view=rev
Author: mcourtot
Date: 2009-10-18 22:04:36 +0000 (Sun, 18 Oct 2009)
Log Message:
-----------
obsoleted hypothesis
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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From: <bjo...@us...> - 2009-10-18 22:02:50
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Revision: 2238
http://obi.svn.sourceforge.net/obi/?rev=2238&view=rev
Author: bjoernpeters
Date: 2009-10-18 22:02:34 +0000 (Sun, 18 Oct 2009)
Log Message:
-----------
Modified Paths:
--------------
trunk/docs/papers/release/Release-Manuscript-Master.doc
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From: <mco...@us...> - 2009-10-18 22:00:53
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Revision: 2237
http://obi.svn.sourceforge.net/obi/?rev=2237&view=rev
Author: mcourtot
Date: 2009-10-18 22:00:46 +0000 (Sun, 18 Oct 2009)
Log Message:
-----------
retire measure function and use produce data function in its place and relabel produce data function as measure function - look at definition
Modified Paths:
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trunk/src/ontology/branches/obi.owl
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